Zinc in PDB 7jj8: Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca

The structure of Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca, PDB code: 7jj8 was solved by Z.Luo, J.R.More, B.Kobe, C.A.Mcdevitt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.36 / 2.03
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	60.372, 67.956, 79.622, 92.28, 104.70, 115.96
R / Rfree (%)	16.9 / 21.3

The binding sites of Zinc atom in the Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca (pdb code 7jj8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca, PDB code: 7jj8:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:23.2 occ:0.88 OE2 B:GLU279 1.9 21.9 1.0 NE2 B:HIS140 2.0 22.2 1.0 NE2 B:HIS63 2.0 25.4 1.0 NE2 B:HIS204 2.1 23.8 1.0 CD B:GLU279 2.7 26.5 1.0 CE1 B:HIS204 2.8 36.2 1.0 OE1 B:GLU279 2.9 25.1 1.0 CD2 B:HIS140 3.0 15.6 1.0 CE1 B:HIS140 3.0 17.8 1.0 CD2 B:HIS63 3.0 29.7 1.0 CE1 B:HIS63 3.1 26.0 1.0 CD2 B:HIS204 3.2 26.8 1.0 O B:HOH619 3.7 36.7 1.0 ND1 B:HIS204 4.0 32.6 1.0 ND1 B:HIS140 4.1 19.1 1.0 CG B:HIS140 4.1 18.1 1.0 CG B:GLU279 4.1 22.9 1.0 ND1 B:HIS63 4.2 23.2 1.0 CG B:HIS63 4.2 30.8 1.0 CG B:HIS204 4.2 26.5 1.0 CB B:ALA206 4.4 19.9 1.0 CE B:MET88 4.7 40.5 1.0 CB B:PRO277 4.9 19.8 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:21.8 occ:0.91 CE1 A:HIS63 1.9 24.2 1.0 OE2 A:GLU279 2.0 21.0 1.0 NE2 A:HIS204 2.0 29.7 1.0 NE2 A:HIS140 2.0 24.7 1.0 NE2 A:HIS63 2.6 27.3 1.0 CE1 A:HIS204 2.7 36.6 1.0 CD A:GLU279 2.7 24.2 1.0 OE1 A:GLU279 2.8 27.3 1.0 CE1 A:HIS140 3.0 18.7 1.0 CD2 A:HIS140 3.1 22.6 1.0 ND1 A:HIS63 3.1 32.8 1.0 CD2 A:HIS204 3.3 34.0 1.0 CD2 A:HIS63 3.9 27.1 1.0 ND1 A:HIS204 3.9 36.5 1.0 CG A:HIS63 4.1 34.9 1.0 ND1 A:HIS140 4.1 20.9 1.0 CG A:HIS140 4.2 23.1 1.0 CG A:GLU279 4.2 19.4 1.0 CG A:HIS204 4.2 33.6 1.0 CB A:ALA206 4.3 20.4 1.0 CB A:PRO277 5.0 19.5 1.0 SD A:MET88 5.0 32.1 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn401 b:22.7 occ:0.88 OE2 C:GLU279 1.8 23.6 1.0 NE2 C:HIS63 2.0 28.0 1.0 NE2 C:HIS204 2.1 27.6 1.0 CE1 C:HIS140 2.1 19.5 1.0 CD C:GLU279 2.7 29.4 1.0 CE1 C:HIS204 2.8 36.8 1.0 OE1 C:GLU279 3.0 23.5 1.0 CD2 C:HIS63 3.0 28.6 1.0 NE2 C:HIS140 3.0 26.3 1.0 CE1 C:HIS63 3.1 32.3 1.0 ND1 C:HIS140 3.1 23.6 1.0 CD2 C:HIS204 3.3 29.7 1.0 ND1 C:HIS204 4.0 38.9 1.0 CG C:GLU279 4.1 23.8 1.0 CG C:HIS63 4.1 31.4 1.0 ND1 C:HIS63 4.1 28.4 1.0 CD2 C:HIS140 4.2 20.1 1.0 CG C:HIS204 4.3 30.7 1.0 CG C:HIS140 4.3 21.5 1.0 CB C:ALA206 4.5 17.4 1.0 CE C:MET88 4.7 41.9 1.0 CB C:PRO277 4.8 20.0 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Zn(II)-Bound Znua-Like Domain of Streptococcus Pneumoniae Adca within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn401 b:22.3 occ:0.95 OE2 D:GLU279 1.9 23.4 1.0 NE2 D:HIS63 2.0 28.0 1.0 NE2 D:HIS140 2.0 20.9 1.0 NE2 D:HIS204 2.1 27.1 1.0 CD D:GLU279 2.8 27.1 1.0 CE1 D:HIS204 2.8 37.4 1.0 CE1 D:HIS63 2.9 27.8 1.0 CE1 D:HIS140 3.0 22.2 1.0 OE1 D:GLU279 3.0 23.1 1.0 CD2 D:HIS63 3.0 27.4 1.0 CD2 D:HIS140 3.1 21.9 1.0 CD2 D:HIS204 3.2 27.3 1.0 O D:HOH605 3.6 38.6 1.0 ND1 D:HIS204 4.0 34.5 1.0 ND1 D:HIS63 4.0 29.1 1.0 ND1 D:HIS140 4.1 20.6 1.0 CG D:HIS63 4.1 30.7 1.0 CG D:HIS140 4.2 25.6 1.0 CG D:GLU279 4.2 22.6 1.0 CG D:HIS204 4.2 30.2 1.0 CB D:ALA206 4.5 21.5 1.0 CE D:MET88 4.8 35.8 1.0 CB D:PRO277 4.9 18.9 1.0 SD D:MET88 5.0 31.5 1.0

Z.Luo, J.R.Morey, E.Deplazes, V.G.Pederick, A.Motygullina, S.L.Begg, N.Eleftheriadis, M.Isselstein, J.C.Paton, T.Cordes, J.Harmer, B.Kobe, C.A.Mcdevitt. The Molecular Basis of Zinc Acquisition By Streptococcus Pneumoniae Adca To Be Published.