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Zinc in PDB 7fuj: Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with (Z)-2-Cyano-N-[4-(3-Fluorophenyl)-5-Methylsulfonylpyrimidin-2-Yl]-3- Hydroxy-3-(5-Methyl-1,2-Oxazol-4-Yl)Prop-2-Enamide

Enzymatic activity of Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with (Z)-2-Cyano-N-[4-(3-Fluorophenyl)-5-Methylsulfonylpyrimidin-2-Yl]-3- Hydroxy-3-(5-Methyl-1,2-Oxazol-4-Yl)Prop-2-Enamide

All present enzymatic activity of Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with (Z)-2-Cyano-N-[4-(3-Fluorophenyl)-5-Methylsulfonylpyrimidin-2-Yl]-3- Hydroxy-3-(5-Methyl-1,2-Oxazol-4-Yl)Prop-2-Enamide:
2.7.7.86;

Protein crystallography data

The structure of Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with (Z)-2-Cyano-N-[4-(3-Fluorophenyl)-5-Methylsulfonylpyrimidin-2-Yl]-3- Hydroxy-3-(5-Methyl-1,2-Oxazol-4-Yl)Prop-2-Enamide, PDB code: 7fuj was solved by L.Leibrock, J.Benz, K.Groebke-Zbinden, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.37 / 1.79
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.83, 60.142, 126.449, 90, 90, 90
R / Rfree (%) 19.9 / 25.4

Other elements in 7fuj:

The structure of Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with (Z)-2-Cyano-N-[4-(3-Fluorophenyl)-5-Methylsulfonylpyrimidin-2-Yl]-3- Hydroxy-3-(5-Methyl-1,2-Oxazol-4-Yl)Prop-2-Enamide also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Fluorine (F) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with (Z)-2-Cyano-N-[4-(3-Fluorophenyl)-5-Methylsulfonylpyrimidin-2-Yl]-3- Hydroxy-3-(5-Methyl-1,2-Oxazol-4-Yl)Prop-2-Enamide (pdb code 7fuj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with (Z)-2-Cyano-N-[4-(3-Fluorophenyl)-5-Methylsulfonylpyrimidin-2-Yl]-3- Hydroxy-3-(5-Methyl-1,2-Oxazol-4-Yl)Prop-2-Enamide, PDB code: 7fuj:

Zinc binding site 1 out of 1 in 7fuj

Go back to Zinc Binding Sites List in 7fuj
Zinc binding site 1 out of 1 in the Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with (Z)-2-Cyano-N-[4-(3-Fluorophenyl)-5-Methylsulfonylpyrimidin-2-Yl]-3- Hydroxy-3-(5-Methyl-1,2-Oxazol-4-Yl)Prop-2-Enamide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Cyclic Gmp-Amp Synthase in Complex with (Z)-2-Cyano-N-[4-(3-Fluorophenyl)-5-Methylsulfonylpyrimidin-2-Yl]-3- Hydroxy-3-(5-Methyl-1,2-Oxazol-4-Yl)Prop-2-Enamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:17.5
occ:1.00
 NE2 A:HIS390 2.1 14.8 1.0
SG A:CYS397 2.3 17.4 1.0
SG A:CYS396 2.3 17.8 1.0
SG A:CYS404 2.4 17.3 1.0
CD2 A:HIS390 3.0 14.5 1.0
CE1 A:HIS390 3.2 16.3 1.0
CB A:CYS404 3.4 18.6 1.0
CB A:CYS397 3.4 18.4 1.0
CB A:CYS396 3.5 18.0 1.0
N A:CYS397 3.7 17.4 1.0
C A:CYS396 3.8 17.2 1.0
N A:CYS404 3.9 22.4 1.0
O A:HOH866 3.9 15.5 1.0
CA A:CYS397 4.1 18.4 1.0
CA A:CYS404 4.1 18.5 1.0
CA A:CYS396 4.2 17.2 1.0
CG A:HIS390 4.2 14.0 1.0
O A:CYS396 4.2 18.1 1.0
ND1 A:HIS390 4.3 14.6 1.0
NH2 A:ARG406 4.3 15.0 1.0
O A:GLU402 4.4 27.4 1.0
O A:HOH860 4.4 19.3 1.0
C A:CYS404 4.7 15.9 1.0
O A:CYS404 4.8 16.0 1.0
O A:HOH876 4.8 17.1 1.0
O A:HOH861 5.0 21.4 1.0

Reference:

K.Groebke-Zbinden, A.Vandemeulebroucke, M.Hilbert, M.G.Rudolph. Crystal Structure of A Human Cyclic Gmp-Amp Synthase Complex To Be Published.
Page generated: Tue Oct 29 20:41:08 2024

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