Atomistry » Zinc » PDB 7f99-7ftp » 7fjj
Atomistry »
  Zinc »
    PDB 7f99-7ftp »
      7fjj »

Zinc in PDB 7fjj: Human Pol III Pre-Termination Complex

Enzymatic activity of Human Pol III Pre-Termination Complex

All present enzymatic activity of Human Pol III Pre-Termination Complex:
2.7.7.6;

Other elements in 7fjj:

The structure of Human Pol III Pre-Termination Complex also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Pol III Pre-Termination Complex (pdb code 7fjj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Human Pol III Pre-Termination Complex, PDB code: 7fjj:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in 7fjj

Go back to Zinc Binding Sites List in 7fjj
Zinc binding site 1 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1902

b:109.9
occ:1.00
 NE2 A:HIS82 2.3 84.0 1.0
SG A:CYS69 2.3 96.0 1.0
SG A:CYS79 2.3 88.7 1.0
SG A:CYS72 2.3 94.5 1.0
CE1 A:HIS82 3.2 84.0 1.0
CD2 A:HIS82 3.3 84.0 1.0
CB A:CYS79 3.4 88.7 1.0
CB A:CYS69 3.5 96.0 1.0
CB A:CYS72 3.7 94.5 1.0
CA A:CYS79 4.0 88.7 1.0
N A:CYS72 4.0 94.5 1.0
OG1 A:THR71 4.2 92.6 1.0
CA A:CYS72 4.3 94.5 1.0
ND1 A:HIS82 4.3 84.0 1.0
CG A:HIS82 4.4 84.0 1.0
O A:CYS72 4.5 94.5 1.0
CB A:LYS74 4.5 89.0 1.0
C A:CYS72 4.6 94.5 1.0
N A:LEU80 4.6 84.7 1.0
O A:LYS74 4.7 89.0 1.0
C A:CYS79 4.8 88.7 1.0
N A:LYS74 4.8 89.0 1.0
CA A:CYS69 4.9 96.0 1.0

Zinc binding site 2 out of 7 in 7fjj

Go back to Zinc Binding Sites List in 7fjj
Zinc binding site 2 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1903

b:140.3
occ:1.00
 SG A:CYS159 1.5 121.4 1.0
SG A:CYS109 2.5 104.6 1.0
SG A:CYS112 3.0 105.2 1.0
CB A:CYS159 3.2 121.4 1.0
SG A:CYS156 3.3 118.4 1.0
N A:CYS159 3.4 121.4 1.0
CB A:CYS109 3.4 104.6 1.0
CB A:CYS156 3.5 118.4 1.0
CB A:ALA161 3.7 117.2 1.0
CB A:CYS112 3.7 105.2 1.0
CA A:CYS159 3.8 121.4 1.0
N A:ALA161 3.9 117.2 1.0
CB A:HIS158 4.1 119.3 1.0
N A:GLY160 4.1 118.5 1.0
C A:CYS159 4.2 121.4 1.0
N A:CYS112 4.3 105.2 1.0
C A:HIS158 4.3 119.3 1.0
CA A:ALA161 4.4 117.2 1.0
CA A:CYS112 4.6 105.2 1.0
OD1 A:ASN163 4.6 112.6 1.0
CA A:HIS158 4.7 119.3 1.0
CA A:CYS109 4.8 104.6 1.0
O A:ALA161 4.8 117.2 1.0
N A:HIS158 4.9 119.3 1.0
CA A:CYS156 5.0 118.4 1.0
C A:GLY160 5.0 118.5 1.0

Zinc binding site 3 out of 7 in 7fjj

Go back to Zinc Binding Sites List in 7fjj
Zinc binding site 3 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1201

b:95.5
occ:1.00
 SG B:CYS1083 1.9 81.5 1.0
SG B:CYS1080 2.3 81.6 1.0
SG B:CYS1092 2.3 86.5 1.0
SG B:CYS1095 2.4 88.1 1.0
CB B:CYS1080 2.7 81.6 1.0
CB B:CYS1092 3.1 86.5 1.0
CB B:CYS1083 3.6 81.5 1.0
CB B:CYS1095 3.8 88.1 1.0
CA B:CYS1080 4.1 81.6 1.0
N B:CYS1095 4.3 88.1 1.0
O B:CYS1095 4.4 88.1 1.0
CA B:CYS1092 4.5 86.5 1.0
O B:LEU1085 4.6 77.4 1.0
N B:CYS1083 4.6 81.5 1.0
CG B:GLN1082 4.7 83.6 1.0
CA B:CYS1083 4.7 81.5 1.0
CA B:CYS1095 4.8 88.1 1.0
N B:CYS1080 4.8 81.6 1.0
CB B:TYR1094 4.9 85.8 1.0
NE2 B:GLN1082 4.9 83.6 1.0
C B:CYS1080 4.9 81.6 1.0

Zinc binding site 4 out of 7 in 7fjj

Go back to Zinc Binding Sites List in 7fjj
Zinc binding site 4 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn201

b:196.5
occ:1.00
 CB I:ASN99 2.8 191.9 1.0
SG I:CYS72 3.1 186.9 1.0
SG I:CYS102 3.2 191.3 1.0
N I:ASN99 3.2 191.9 1.0
SG I:CYS97 3.5 189.3 1.0
CA I:ASN99 3.6 191.9 1.0
C I:CYS98 3.7 190.6 1.0
CB I:CYS97 3.7 189.3 1.0
N I:CYS98 3.8 190.6 1.0
CB I:CYS102 3.9 191.3 1.0
C I:CYS97 3.9 189.3 1.0
O I:CYS102 4.0 191.3 1.0
CG I:ASN99 4.0 191.9 1.0
CA I:CYS98 4.1 190.6 1.0
ND2 I:ASN99 4.2 191.9 1.0
O I:CYS97 4.3 189.3 1.0
CB I:CYS72 4.4 186.9 1.0
CA I:CYS97 4.4 189.3 1.0
O I:CYS98 4.4 190.6 1.0
O I:ARG76 4.5 186.6 1.0
C I:ASN99 4.6 191.9 1.0
C I:CYS102 4.6 191.3 1.0
O I:ASN99 4.9 191.9 1.0
CA I:CYS102 4.9 191.3 1.0

Zinc binding site 5 out of 7 in 7fjj

Go back to Zinc Binding Sites List in 7fjj
Zinc binding site 5 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn202

b:88.2
occ:1.00
 SG I:CYS5 2.4 79.0 1.0
SG I:CYS25 2.5 86.2 1.0
SG I:CYS28 2.5 87.3 1.0
SG I:CYS8 2.5 77.8 1.0
CB I:CYS5 2.8 79.0 1.0
CB I:CYS25 3.0 86.2 1.0
CB I:CYS28 3.7 87.3 1.0
CB I:CYS8 4.0 77.8 1.0
N I:CYS8 4.0 77.8 1.0
CA I:CYS5 4.3 79.0 1.0
OG1 I:THR27 4.4 84.5 1.0
CA I:CYS8 4.4 77.8 1.0
CA I:CYS25 4.5 86.2 1.0
N I:CYS28 4.5 87.3 1.0
N I:GLY9 4.6 76.9 1.0
CB I:TYR30 4.6 87.0 1.0
CA I:CYS28 4.6 87.3 1.0
N I:ASN10 4.7 77.4 1.0
C I:CYS8 4.9 77.8 1.0
C I:CYS5 4.9 79.0 1.0
CB I:ASN10 4.9 77.4 1.0

Zinc binding site 6 out of 7 in 7fjj

Go back to Zinc Binding Sites List in 7fjj
Zinc binding site 6 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn2000

b:30.0
occ:1.00
 SG J:CYS10 1.4 57.9 1.0
SG J:CYS44 2.3 57.1 1.0
SG J:CYS7 2.3 54.0 1.0
SG J:CYS45 2.3 54.9 1.0
N J:CYS45 2.8 54.9 1.0
CB J:CYS10 3.0 57.9 1.0
CB J:CYS44 3.2 57.1 1.0
CA J:CYS45 3.3 54.9 1.0
C J:CYS44 3.3 57.1 1.0
CB J:CYS7 3.3 54.0 1.0
CB J:CYS45 3.4 54.9 1.0
CA J:CYS44 3.8 57.1 1.0
N J:CYS10 3.8 57.9 1.0
CA J:CYS10 4.0 57.9 1.0
O J:CYS44 4.0 57.1 1.0
OG1 J:THR9 4.5 55.0 1.0
CD J:ARG42 4.5 58.8 1.0
CG J:ARG42 4.6 58.8 1.0
N J:CYS44 4.6 57.1 1.0
CA J:CYS7 4.7 54.0 1.0
C J:CYS45 4.8 54.9 1.0
N J:GLY11 4.8 55.5 1.0
C J:CYS10 4.9 57.9 1.0

Zinc binding site 7 out of 7 in 7fjj

Go back to Zinc Binding Sites List in 7fjj
Zinc binding site 7 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn101

b:98.6
occ:1.00
 CB L:CYS22 2.0 85.9 1.0
SG L:CYS19 2.3 81.3 1.0
SG L:CYS39 2.3 98.0 1.0
CB L:CYS19 3.1 81.3 1.0
CA L:CYS22 3.1 85.9 1.0
N L:CYS22 3.1 85.9 1.0
CB L:CYS39 3.4 98.0 1.0
SG L:CYS22 3.4 85.9 1.0
OG1 L:THR24 3.8 83.6 1.0
C L:CYS22 4.0 85.9 1.0
OE2 L:GLU21 4.0 84.8 1.0
CB L:CYS36 4.0 93.2 1.0
N L:HIS23 4.0 83.8 1.0
CA L:CYS19 4.4 81.3 1.0
C L:GLU21 4.4 84.8 1.0
O L:ARG37 4.5 95.1 1.0
SG L:CYS36 4.6 93.2 1.0
N L:THR24 4.6 83.6 1.0
CA L:CYS39 4.7 98.0 1.0
N L:CYS39 4.8 98.0 1.0
C L:CYS19 4.8 81.3 1.0
N L:GLU21 4.8 84.8 1.0
ND2 L:ASN26 4.9 87.2 1.0
CB L:TYR41 4.9 95.7 1.0
O L:CYS22 5.0 85.9 1.0

Reference:

H.Hou, Y.Xu. Human Pol III Pre-Termination Complex To Be Published.
Page generated: Tue Oct 29 20:31:53 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy