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Zinc in PDB 7fjj: Human Pol III Pre-Termination Complex

Enzymatic activity of Human Pol III Pre-Termination Complex

All present enzymatic activity of Human Pol III Pre-Termination Complex:
2.7.7.6;

Other elements in 7fjj:

The structure of Human Pol III Pre-Termination Complex also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Pol III Pre-Termination Complex (pdb code 7fjj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Human Pol III Pre-Termination Complex, PDB code: 7fjj:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in 7fjj

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Zinc binding site 1 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1902

b:109.9
occ:1.00
 NE2 A:HIS82 2.3 84.0 1.0
SG A:CYS69 2.3 96.0 1.0
SG A:CYS79 2.3 88.7 1.0
SG A:CYS72 2.3 94.5 1.0
CE1 A:HIS82 3.2 84.0 1.0
CD2 A:HIS82 3.3 84.0 1.0
CB A:CYS79 3.4 88.7 1.0
CB A:CYS69 3.5 96.0 1.0
CB A:CYS72 3.7 94.5 1.0
CA A:CYS79 4.0 88.7 1.0
N A:CYS72 4.0 94.5 1.0
OG1 A:THR71 4.2 92.6 1.0
CA A:CYS72 4.3 94.5 1.0
ND1 A:HIS82 4.3 84.0 1.0
CG A:HIS82 4.4 84.0 1.0
O A:CYS72 4.5 94.5 1.0
CB A:LYS74 4.5 89.0 1.0
C A:CYS72 4.6 94.5 1.0
N A:LEU80 4.6 84.7 1.0
O A:LYS74 4.7 89.0 1.0
C A:CYS79 4.8 88.7 1.0
N A:LYS74 4.8 89.0 1.0
CA A:CYS69 4.9 96.0 1.0

Zinc binding site 2 out of 7 in 7fjj

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Zinc binding site 2 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1903

b:140.3
occ:1.00
 SG A:CYS159 1.5 121.4 1.0
SG A:CYS109 2.5 104.6 1.0
SG A:CYS112 3.0 105.2 1.0
CB A:CYS159 3.2 121.4 1.0
SG A:CYS156 3.3 118.4 1.0
N A:CYS159 3.4 121.4 1.0
CB A:CYS109 3.4 104.6 1.0
CB A:CYS156 3.5 118.4 1.0
CB A:ALA161 3.7 117.2 1.0
CB A:CYS112 3.7 105.2 1.0
CA A:CYS159 3.8 121.4 1.0
N A:ALA161 3.9 117.2 1.0
CB A:HIS158 4.1 119.3 1.0
N A:GLY160 4.1 118.5 1.0
C A:CYS159 4.2 121.4 1.0
N A:CYS112 4.3 105.2 1.0
C A:HIS158 4.3 119.3 1.0
CA A:ALA161 4.4 117.2 1.0
CA A:CYS112 4.6 105.2 1.0
OD1 A:ASN163 4.6 112.6 1.0
CA A:HIS158 4.7 119.3 1.0
CA A:CYS109 4.8 104.6 1.0
O A:ALA161 4.8 117.2 1.0
N A:HIS158 4.9 119.3 1.0
CA A:CYS156 5.0 118.4 1.0
C A:GLY160 5.0 118.5 1.0

Zinc binding site 3 out of 7 in 7fjj

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Zinc binding site 3 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1201

b:95.5
occ:1.00
 SG B:CYS1083 1.9 81.5 1.0
SG B:CYS1080 2.3 81.6 1.0
SG B:CYS1092 2.3 86.5 1.0
SG B:CYS1095 2.4 88.1 1.0
CB B:CYS1080 2.7 81.6 1.0
CB B:CYS1092 3.1 86.5 1.0
CB B:CYS1083 3.6 81.5 1.0
CB B:CYS1095 3.8 88.1 1.0
CA B:CYS1080 4.1 81.6 1.0
N B:CYS1095 4.3 88.1 1.0
O B:CYS1095 4.4 88.1 1.0
CA B:CYS1092 4.5 86.5 1.0
O B:LEU1085 4.6 77.4 1.0
N B:CYS1083 4.6 81.5 1.0
CG B:GLN1082 4.7 83.6 1.0
CA B:CYS1083 4.7 81.5 1.0
CA B:CYS1095 4.8 88.1 1.0
N B:CYS1080 4.8 81.6 1.0
CB B:TYR1094 4.9 85.8 1.0
NE2 B:GLN1082 4.9 83.6 1.0
C B:CYS1080 4.9 81.6 1.0

Zinc binding site 4 out of 7 in 7fjj

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Zinc binding site 4 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn201

b:196.5
occ:1.00
 CB I:ASN99 2.8 191.9 1.0
SG I:CYS72 3.1 186.9 1.0
SG I:CYS102 3.2 191.3 1.0
N I:ASN99 3.2 191.9 1.0
SG I:CYS97 3.5 189.3 1.0
CA I:ASN99 3.6 191.9 1.0
C I:CYS98 3.7 190.6 1.0
CB I:CYS97 3.7 189.3 1.0
N I:CYS98 3.8 190.6 1.0
CB I:CYS102 3.9 191.3 1.0
C I:CYS97 3.9 189.3 1.0
O I:CYS102 4.0 191.3 1.0
CG I:ASN99 4.0 191.9 1.0
CA I:CYS98 4.1 190.6 1.0
ND2 I:ASN99 4.2 191.9 1.0
O I:CYS97 4.3 189.3 1.0
CB I:CYS72 4.4 186.9 1.0
CA I:CYS97 4.4 189.3 1.0
O I:CYS98 4.4 190.6 1.0
O I:ARG76 4.5 186.6 1.0
C I:ASN99 4.6 191.9 1.0
C I:CYS102 4.6 191.3 1.0
O I:ASN99 4.9 191.9 1.0
CA I:CYS102 4.9 191.3 1.0

Zinc binding site 5 out of 7 in 7fjj

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Zinc binding site 5 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn202

b:88.2
occ:1.00
 SG I:CYS5 2.4 79.0 1.0
SG I:CYS25 2.5 86.2 1.0
SG I:CYS28 2.5 87.3 1.0
SG I:CYS8 2.5 77.8 1.0
CB I:CYS5 2.8 79.0 1.0
CB I:CYS25 3.0 86.2 1.0
CB I:CYS28 3.7 87.3 1.0
CB I:CYS8 4.0 77.8 1.0
N I:CYS8 4.0 77.8 1.0
CA I:CYS5 4.3 79.0 1.0
OG1 I:THR27 4.4 84.5 1.0
CA I:CYS8 4.4 77.8 1.0
CA I:CYS25 4.5 86.2 1.0
N I:CYS28 4.5 87.3 1.0
N I:GLY9 4.6 76.9 1.0
CB I:TYR30 4.6 87.0 1.0
CA I:CYS28 4.6 87.3 1.0
N I:ASN10 4.7 77.4 1.0
C I:CYS8 4.9 77.8 1.0
C I:CYS5 4.9 79.0 1.0
CB I:ASN10 4.9 77.4 1.0

Zinc binding site 6 out of 7 in 7fjj

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Zinc binding site 6 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn2000

b:30.0
occ:1.00
 SG J:CYS10 1.4 57.9 1.0
SG J:CYS44 2.3 57.1 1.0
SG J:CYS7 2.3 54.0 1.0
SG J:CYS45 2.3 54.9 1.0
N J:CYS45 2.8 54.9 1.0
CB J:CYS10 3.0 57.9 1.0
CB J:CYS44 3.2 57.1 1.0
CA J:CYS45 3.3 54.9 1.0
C J:CYS44 3.3 57.1 1.0
CB J:CYS7 3.3 54.0 1.0
CB J:CYS45 3.4 54.9 1.0
CA J:CYS44 3.8 57.1 1.0
N J:CYS10 3.8 57.9 1.0
CA J:CYS10 4.0 57.9 1.0
O J:CYS44 4.0 57.1 1.0
OG1 J:THR9 4.5 55.0 1.0
CD J:ARG42 4.5 58.8 1.0
CG J:ARG42 4.6 58.8 1.0
N J:CYS44 4.6 57.1 1.0
CA J:CYS7 4.7 54.0 1.0
C J:CYS45 4.8 54.9 1.0
N J:GLY11 4.8 55.5 1.0
C J:CYS10 4.9 57.9 1.0

Zinc binding site 7 out of 7 in 7fjj

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Zinc binding site 7 out of 7 in the Human Pol III Pre-Termination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Human Pol III Pre-Termination Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn101

b:98.6
occ:1.00
 CB L:CYS22 2.0 85.9 1.0
SG L:CYS19 2.3 81.3 1.0
SG L:CYS39 2.3 98.0 1.0
CB L:CYS19 3.1 81.3 1.0
CA L:CYS22 3.1 85.9 1.0
N L:CYS22 3.1 85.9 1.0
CB L:CYS39 3.4 98.0 1.0
SG L:CYS22 3.4 85.9 1.0
OG1 L:THR24 3.8 83.6 1.0
C L:CYS22 4.0 85.9 1.0
OE2 L:GLU21 4.0 84.8 1.0
CB L:CYS36 4.0 93.2 1.0
N L:HIS23 4.0 83.8 1.0
CA L:CYS19 4.4 81.3 1.0
C L:GLU21 4.4 84.8 1.0
O L:ARG37 4.5 95.1 1.0
SG L:CYS36 4.6 93.2 1.0
N L:THR24 4.6 83.6 1.0
CA L:CYS39 4.7 98.0 1.0
N L:CYS39 4.8 98.0 1.0
C L:CYS19 4.8 81.3 1.0
N L:GLU21 4.8 84.8 1.0
ND2 L:ASN26 4.9 87.2 1.0
CB L:TYR41 4.9 95.7 1.0
O L:CYS22 5.0 85.9 1.0

Reference:

H.Hou, Y.Xu. Human Pol III Pre-Termination Complex To Be Published.
Page generated: Tue Oct 29 20:31:53 2024

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