Zinc in PDB 7eth: Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii

Enzymatic activity of Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii

All present enzymatic activity of Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii:
4.1.2.52;

Protein crystallography data

The structure of Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii, PDB code: 7eth was solved by P.Watthaisong, A.Binlaeh, A.Jaruwat, P.Chaiyen, P.Chitnumsub, S.Maenpuen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.71 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 147.183, 89.643, 86.312, 90, 122.55, 90
R / Rfree (%) 17.5 / 21.5

Other elements in 7eth:

The structure of Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii (pdb code 7eth). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii, PDB code: 7eth:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 7eth

Go back to Zinc Binding Sites List in 7eth
Zinc binding site 1 out of 3 in the Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:12.5
occ:1.00
OD2 A:ASP177 2.0 9.0 1.0
OE2 A:GLU151 2.1 9.5 1.0
O A:HOH410 2.1 10.6 1.0
O B:HOH413 2.1 15.6 1.0
O3 A:PYR301 2.2 16.0 1.0
O2 A:PYR301 2.3 14.7 1.0
C2 A:PYR301 3.0 17.1 1.0
C1 A:PYR301 3.0 18.6 1.0
CD A:GLU151 3.1 9.5 1.0
CG A:ASP177 3.1 8.0 1.0
OE1 A:GLU151 3.4 9.2 1.0
CB A:ASP177 3.6 8.0 1.0
NE2 A:GLN149 3.6 9.1 1.0
O A:HOH433 3.8 5.8 1.0
NH1 A:ARG72 3.9 5.9 1.0
OD1 A:ASP177 4.2 7.6 1.0
O1 A:PYR301 4.2 20.1 1.0
O B:VAL120 4.2 8.7 1.0
O1 A:CBG303 4.3 28.2 1.0
OE1 A:GLU46 4.4 4.2 1.0
CG A:GLU151 4.4 8.7 1.0
C3 A:PYR301 4.4 17.0 1.0
N A:ASP177 4.4 8.1 1.0
CD A:GLN149 4.5 9.2 1.0
CA A:ASP177 4.6 8.0 1.0
CA A:GLY174 4.6 11.5 1.0
OE1 A:GLN149 4.7 11.2 1.0
CB A:GLU151 4.7 8.5 1.0
C1 A:CBG303 4.9 31.0 1.0
CZ A:ARG72 4.9 5.7 1.0
NE2 A:HIS47 5.0 4.9 1.0

Zinc binding site 2 out of 3 in 7eth

Go back to Zinc Binding Sites List in 7eth
Zinc binding site 2 out of 3 in the Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:11.4
occ:1.00
O B:HOH407 2.0 6.9 1.0
OD2 B:ASP177 2.0 8.5 1.0
OE2 B:GLU151 2.1 8.8 1.0
O3 B:PYR300 2.2 15.9 1.0
O B:HOH410 2.2 7.8 1.0
O2 B:PYR300 2.3 14.3 1.0
CD B:GLU151 3.0 9.3 1.0
C2 B:PYR300 3.0 17.4 1.0
CG B:ASP177 3.0 7.6 1.0
C1 B:PYR300 3.0 18.8 1.0
OE1 B:GLU151 3.3 8.8 1.0
CB B:ASP177 3.5 7.9 1.0
NE2 B:GLN149 3.7 9.1 1.0
O B:HOH416 3.8 3.5 1.0
NH1 B:ARG72 4.0 6.2 1.0
OD1 B:ASP177 4.1 7.1 1.0
O1 B:CBG302 4.2 21.2 1.0
O C:VAL120 4.2 10.9 1.0
O1 B:PYR300 4.3 20.8 1.0
N B:ASP177 4.4 8.1 1.0
CG B:GLU151 4.4 8.8 1.0
OE1 B:GLU46 4.4 4.6 1.0
C3 B:PYR300 4.5 17.2 1.0
CA B:GLY174 4.5 9.9 1.0
CA B:ASP177 4.5 8.1 1.0
CD B:GLN149 4.6 8.7 1.0
OE1 B:GLN149 4.7 9.9 1.0
CB B:GLU151 4.7 8.9 1.0
CZ B:ARG72 4.9 6.3 1.0

Zinc binding site 3 out of 3 in 7eth

Go back to Zinc Binding Sites List in 7eth
Zinc binding site 3 out of 3 in the Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Abhpai-Zn-Pyruvate-Propionaldehyde Complex, Class II Aldolase, Hpai From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn301

b:12.1
occ:1.00
O C:HOH428 2.0 8.7 1.0
OD2 C:ASP177 2.0 9.4 1.0
OE2 C:GLU151 2.1 12.2 1.0
O A:HOH415 2.1 10.9 1.0
O3 C:PYR300 2.2 16.1 1.0
O1 C:PYR300 2.3 14.8 1.0
CD C:GLU151 3.0 12.8 1.0
C1 C:PYR300 3.0 18.7 1.0
C2 C:PYR300 3.0 18.0 1.0
CG C:ASP177 3.1 8.5 1.0
OE1 C:GLU151 3.3 12.3 1.0
CB C:ASP177 3.5 8.4 1.0
NE2 C:GLN149 3.6 7.5 1.0
O C:HOH407 3.8 4.4 1.0
NH1 C:ARG72 3.9 7.0 1.0
OD1 C:ASP177 4.1 8.4 1.0
O A:VAL120 4.2 9.6 1.0
O2 C:PYR300 4.3 20.1 1.0
O1 C:CBG302 4.3 21.6 1.0
CG C:GLU151 4.3 11.8 1.0
OE1 C:GLU46 4.4 5.7 1.0
N C:ASP177 4.4 8.2 1.0
C3 C:PYR300 4.5 17.5 1.0
CA C:GLY174 4.5 10.5 1.0
CD C:GLN149 4.5 7.7 1.0
CA C:ASP177 4.6 8.4 1.0
CB C:GLU151 4.7 11.4 1.0
OE1 C:GLN149 4.7 8.6 1.0
CZ C:ARG72 4.9 6.9 1.0
NE2 C:HIS47 4.9 5.9 1.0

Reference:

P.Watthaisong, A.Binlaeh, A.Jaruwat, N.Lawan, J.Tantipisit, J.Jaroensuk, L.Chuaboon, J.Phonbuppha, R.Tinikul, P.Chaiyen, P.Chitnumsub, S.Maenpuen. Catalytic and Structural Insights Into A Stereospecific and Thermostable Class II Aldolase Hpai From Acinetobacter Baumannii. J.Biol.Chem. 01280 2021.
ISSN: ESSN 1083-351X
PubMed: 34624314
DOI: 10.1016/J.JBC.2021.101280
Page generated: Fri Nov 5 16:51:30 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy