Zinc in PDB 7esi: Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 at 1. 8 Angstrom Resolution.

The structure of Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 at 1. 8 Angstrom Resolution., PDB code: 7esi was solved by H.Y.Cao, Y.Wang, M.Peng, Y.Z.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.79 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	74.444, 50.068, 90.681, 90, 104.72, 90
R / Rfree (%)	15.9 / 18.7

The structure of Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 at 1. 8 Angstrom Resolution. also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Zinc atom in the Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 at 1. 8 Angstrom Resolution. (pdb code 7esi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 at 1. 8 Angstrom Resolution., PDB code: 7esi:

Zinc binding site 1 out of 1 in the Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 at 1. 8 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 at 1. 8 Angstrom Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:14.3 occ:1.00 OE2 A:GLU505 1.9 13.6 1.0 NE2 A:HIS477 2.0 13.5 1.0 NE2 A:HIS481 2.0 15.3 1.0 NE2 B:HIS13 2.1 16.0 1.0 CD A:GLU505 2.7 15.9 1.0 OE1 A:GLU505 2.9 16.4 1.0 CE1 A:HIS477 3.0 15.1 1.0 CD2 A:HIS481 3.0 14.9 1.0 CD2 A:HIS477 3.0 14.8 1.0 CE1 A:HIS481 3.0 17.3 1.0 CE1 B:HIS13 3.0 22.7 1.0 CD2 B:HIS13 3.0 18.3 1.0 OH A:TYR549 4.0 26.6 1.0 ND1 A:HIS477 4.1 14.3 1.0 ND1 A:HIS481 4.1 15.8 1.0 ND1 B:HIS13 4.1 22.6 1.0 CG A:HIS477 4.1 14.0 1.0 CG A:HIS481 4.1 12.8 1.0 CG B:HIS13 4.2 21.8 1.0 CG A:GLU505 4.2 15.6 1.0 CE2 A:TYR549 4.3 22.9 1.0 CB A:ALA508 4.5 13.5 1.0 CZ A:TYR549 4.5 22.2 1.0 OE1 A:GLU478 4.6 19.2 1.0 CA A:GLU505 4.6 12.1 1.0 CB A:GLU505 4.7 13.4 1.0 O A:HOH1082 4.9 24.7 1.0

Y.Wang, H.Y.Cao, M.Peng. Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 at 1. 8 Angstrom Resolution. To Be Published.