Zinc in PDB 7dta: Solution Structure of the C-Clamp Domain From Human HDBP1 in Complex with Dna

The binding sites of Zinc atom in the Solution Structure of the C-Clamp Domain From Human HDBP1 in Complex with Dna (pdb code 7dta). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution Structure of the C-Clamp Domain From Human HDBP1 in Complex with Dna, PDB code: 7dta:

Zinc binding site 1 out of 1 in the Solution Structure of the C-Clamp Domain From Human HDBP1 in Complex with Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the C-Clamp Domain From Human HDBP1 in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS373 2.4 0.0 1.0 SG A:CYS376 2.4 0.0 1.0 SG A:CYS382 2.5 0.0 1.0 SG A:CYS360 2.5 0.0 1.0 HB2 A:CYS376 3.1 0.0 1.0 HB2 A:CYS360 3.1 0.0 1.0 H A:CYS373 3.2 0.0 1.0 HB3 A:CYS373 3.2 0.0 1.0 HA A:CYS382 3.2 0.0 1.0 HB3 A:ARG384 3.3 0.0 1.0 CB A:CYS376 3.4 0.0 1.0 CB A:CYS373 3.4 0.0 1.0 H A:CYS360 3.4 0.0 1.0 CB A:CYS360 3.4 0.0 1.0 CB A:CYS382 3.5 0.0 1.0 HB2 A:CYS382 3.5 0.0 1.0 H A:CYS376 3.5 0.0 1.0 HD2 A:PHE385 3.7 0.0 1.0 CA A:CYS382 3.9 0.0 1.0 H A:GLN383 3.9 0.0 1.0 H A:ARG384 3.9 0.0 1.0 H A:PHE385 4.0 0.0 1.0 HD3 A:ARG384 4.0 0.0 1.0 HB3 A:LYS359 4.0 0.0 1.0 N A:CYS373 4.0 0.0 1.0 HB3 A:CYS376 4.1 0.0 1.0 HB3 A:CYS360 4.1 0.0 1.0 CA A:CYS373 4.2 0.0 1.0 N A:CYS376 4.2 0.0 1.0 N A:CYS360 4.2 0.0 1.0 HB2 A:CYS373 4.3 0.0 1.0 CB A:ARG384 4.3 0.0 1.0 HB1 A:ALA375 4.4 0.0 1.0 CA A:CYS376 4.4 0.0 1.0 HB3 A:CYS382 4.4 0.0 1.0 CA A:CYS360 4.5 0.0 1.0 HB3 A:TRP372 4.5 0.0 1.0 N A:GLN383 4.5 0.0 1.0 HB2 A:ARG384 4.5 0.0 1.0 C A:CYS382 4.6 0.0 1.0 CD2 A:PHE385 4.7 0.0 1.0 HA A:CYS376 4.8 0.0 1.0 N A:ARG384 4.8 0.0 1.0 HG2 A:GLN383 4.8 0.0 1.0 HB2 A:PHE385 4.8 0.0 1.0 C A:CYS373 4.8 0.0 1.0 O A:CYS373 4.9 0.0 1.0 HH12 A:ARG384 4.9 0.0 1.0 H A:ARG361 4.9 0.0 1.0 CD A:ARG384 5.0 0.0 1.0 N A:PHE385 5.0 0.0 1.0

B.Duan, D.Fu, C.Zhang, P.Ding, X.Dong, B.Xia. Selective Nonmethylated Cpg Dna Recognition Mechanism of Cysteine Clamp Domains. J.Am.Chem.Soc. V. 143 7688 2021.
ISSN: ESSN 1520-5126
PubMed: 33983734
DOI: 10.1021/JACS.1C00599