Zinc in PDB 7drv: Structural Basis of Sars-Cov-2-Closely-Related Bat Coronavirus RATG13 to HACE2

All present enzymatic activity of Structural Basis of Sars-Cov-2-Closely-Related Bat Coronavirus RATG13 to HACE2:
3.4.17.23;

The structure of Structural Basis of Sars-Cov-2-Closely-Related Bat Coronavirus RATG13 to HACE2, PDB code: 7drv was solved by K.F.Liu, X.Q.Pan, L.J.Li, Y.Feng, Y.M.Meng, Y.F.Zhang, L.L.Wu, Q.Chen, A.Q.Zheng, C.L.Song, Y.F.Jia, S.Niu, C.P.Qiao, X.Zhao, D.L.Ma, X.P.Ma, S.G.Tan, J.X.Qi, G.F.Gao, Q.H.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.94 / 3.09
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	81.276, 122.875, 110.742, 90, 95.07, 90
R / Rfree (%)	22.6 / 25

The binding sites of Zinc atom in the Structural Basis of Sars-Cov-2-Closely-Related Bat Coronavirus RATG13 to HACE2 (pdb code 7drv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural Basis of Sars-Cov-2-Closely-Related Bat Coronavirus RATG13 to HACE2, PDB code: 7drv:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structural Basis of Sars-Cov-2-Closely-Related Bat Coronavirus RATG13 to HACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Basis of Sars-Cov-2-Closely-Related Bat Coronavirus RATG13 to HACE2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn703 b:298.4 occ:1.00 OE2 A:GLU402 2.2 113.0 1.0 NE2 A:HIS378 2.3 109.7 1.0 NE2 A:HIS374 2.4 98.1 1.0 CD2 A:HIS374 2.5 92.4 1.0 OE1 A:GLU375 2.6 103.4 1.0 CD A:GLU402 3.1 111.0 1.0 CD2 A:HIS378 3.1 94.3 1.0 OE1 A:GLU402 3.3 124.4 1.0 CE1 A:HIS378 3.4 107.9 1.0 CE1 A:HIS374 3.7 97.9 1.0 CD A:GLU375 3.7 89.9 1.0 CG A:HIS374 3.8 83.1 1.0 OE2 A:GLU375 4.3 95.5 1.0 CG A:HIS378 4.3 92.6 1.0 ND1 A:HIS374 4.4 94.4 1.0 ND1 A:HIS378 4.4 96.1 1.0 CG A:GLU402 4.5 96.5 1.0 O A:HIS374 4.5 87.9 1.0 C A:HIS374 4.9 89.1 1.0 CG A:GLU375 4.9 91.5 1.0 CB A:HIS374 5.0 87.9 1.0

Zinc binding site 2 out of 2 in the Structural Basis of Sars-Cov-2-Closely-Related Bat Coronavirus RATG13 to HACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Basis of Sars-Cov-2-Closely-Related Bat Coronavirus RATG13 to HACE2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn801 b:141.0 occ:1.00 OE2 B:GLU402 2.0 100.5 1.0 NE2 B:HIS374 2.2 85.5 1.0 NE2 B:HIS378 2.3 112.9 1.0 CD B:GLU402 2.6 107.4 1.0 OE1 B:GLU402 2.6 114.5 1.0 CD2 B:HIS374 3.0 82.1 1.0 CE1 B:HIS378 3.1 111.4 1.0 CD2 B:HIS378 3.2 102.8 1.0 CE1 B:HIS374 3.3 78.7 1.0 OE2 B:GLU375 3.7 87.8 1.0 CG B:GLU402 4.0 99.6 1.0 CG B:HIS374 4.2 80.1 1.0 ND1 B:HIS378 4.2 105.3 1.0 CG B:HIS378 4.3 100.7 1.0 ND1 B:HIS374 4.3 79.5 1.0 CD B:GLU375 4.4 86.3 1.0 OE1 B:GLU375 4.4 90.0 1.0 CB B:GLU402 4.5 92.6 1.0 CA B:GLU402 4.6 97.4 1.0

K.Liu, X.Pan, L.Li, F.Yu, A.Zheng, P.Du, P.Han, Y.Meng, Y.Zhang, L.Wu, Q.Chen, C.Song, Y.Jia, S.Niu, D.Lu, C.Qiao, Z.Chen, D.Ma, X.Ma, S.Tan, X.Zhao, J.Qi, G.F.Gao, Q.Wang. Binding and Molecular Basis of the Bat Coronavirus RATG13 Virus to ACE2 in Humans and Other Species. Cell V. 184 3438 2021.
ISSN: ISSN 1097-4172
PubMed: 34139177
DOI: 10.1016/J.CELL.2021.05.031