Atomistry » Zinc » PDB 7cq4-7d3x » 7cyq
Atomistry »
  Zinc »
    PDB 7cq4-7d3x »
      7cyq »

Zinc in PDB 7cyq: Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis

Enzymatic activity of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis

All present enzymatic activity of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis:
3.4.19.12; 3.6.4.13;

Other elements in 7cyq:

The structure of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis (pdb code 7cyq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis, PDB code: 7cyq:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 7cyq

Go back to Zinc Binding Sites List in 7cyq
Zinc binding site 1 out of 8 in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:70.2
occ:1.00
 ND1 A:HIS295 2.1 49.1 1.0
SG A:CYS310 2.3 48.1 1.0
SG A:CYS301 2.3 54.4 1.0
SG A:CYS306 2.3 50.2 1.0
CE1 A:HIS295 2.9 49.1 1.0
CG A:HIS295 3.2 49.1 1.0
O A:CYS306 3.2 50.2 1.0
CB A:CYS301 3.4 54.4 1.0
CB A:CYS310 3.5 48.1 1.0
CB A:CYS306 3.6 50.2 1.0
CB A:HIS295 3.7 49.1 1.0
CA A:CYS301 3.7 54.4 1.0
C A:CYS306 3.8 50.2 1.0
NE2 A:HIS295 4.1 49.1 1.0
CA A:CYS306 4.2 50.2 1.0
N A:HIS295 4.2 49.1 1.0
CD2 A:HIS295 4.2 49.1 1.0
N A:CYS301 4.5 54.4 1.0
CA A:HIS295 4.6 49.1 1.0
N A:ILE307 4.6 47.1 1.0
O A:THR293 4.7 51.5 1.0
N A:CYS310 4.7 48.1 1.0
CA A:CYS310 4.7 48.1 1.0
O A:HIS295 4.9 49.1 1.0
N A:LEU302 4.9 57.6 1.0
C A:CYS301 4.9 54.4 1.0

Zinc binding site 2 out of 8 in 7cyq

Go back to Zinc Binding Sites List in 7cyq
Zinc binding site 2 out of 8 in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:71.7
occ:1.00
 ND1 A:HIS642 2.0 52.5 1.0
SG A:CYS487 2.3 54.9 1.0
SG A:CYS645 2.3 57.5 1.0
SG A:CYS646 2.3 60.1 1.0
CE1 A:HIS642 2.9 52.5 1.0
CG A:HIS642 3.2 52.5 1.0
CB A:CYS646 3.4 60.1 1.0
CB A:CYS487 3.6 54.9 1.0
CB A:CYS645 3.6 57.5 1.0
CB A:HIS642 3.6 52.5 1.0
CE1 A:PHE571 3.8 48.9 1.0
N A:CYS646 3.8 60.1 1.0
N A:CYS487 3.9 54.9 1.0
NE2 A:HIS642 4.0 52.5 1.0
CA A:CYS646 4.1 60.1 1.0
C A:CYS645 4.2 57.5 1.0
CD2 A:HIS642 4.2 52.5 1.0
CD1 A:PHE571 4.2 48.9 1.0
CA A:CYS487 4.2 54.9 1.0
NZ A:LYS532 4.5 47.9 1.0
CA A:CYS645 4.5 57.5 1.0
C A:GLY486 4.6 56.6 1.0
CA A:HIS642 4.6 52.5 1.0
O A:CYS645 4.7 57.5 1.0
CZ A:PHE571 4.8 48.9 1.0
CA A:GLY486 4.9 56.6 1.0
CE A:LYS532 5.0 47.9 1.0

Zinc binding site 3 out of 8 in 7cyq

Go back to Zinc Binding Sites List in 7cyq
Zinc binding site 3 out of 8 in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn701

b:0.5
occ:1.00
 ND1 F:HIS39 2.0 0.9 1.0
NE2 F:HIS33 2.1 0.6 1.0
SG F:CYS16 2.3 0.3 1.0
SG F:CYS19 2.3 0.9 1.0
CB F:CYS19 2.3 0.9 1.0
CE1 F:HIS33 2.8 0.6 1.0
CE1 F:HIS39 2.9 0.9 1.0
CG F:HIS39 3.1 0.9 1.0
CD2 F:HIS33 3.2 0.6 1.0
CB F:CYS16 3.3 0.3 1.0
CA F:CYS19 3.4 0.9 1.0
CB F:HIS39 3.5 0.9 1.0
N F:CYS19 3.9 0.9 1.0
ND1 F:HIS33 3.9 0.6 1.0
CB F:ALA110 4.0 0.4 1.0
NE2 F:HIS39 4.0 0.9 1.0
CD2 F:HIS39 4.1 0.9 1.0
CG F:HIS33 4.2 0.6 1.0
CE2 F:PHE106 4.6 0.7 1.0
C F:CYS19 4.7 0.9 1.0
CA F:CYS16 4.8 0.3 1.0
C F:ALA18 4.9 0.7 1.0
CA F:HIS39 4.9 0.9 1.0
O F:CYS16 5.0 0.3 1.0

Zinc binding site 4 out of 8 in 7cyq

Go back to Zinc Binding Sites List in 7cyq
Zinc binding site 4 out of 8 in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn702

b:0.4
occ:1.00
 CB F:CYS26 1.4 0.1 1.0
SG F:CYS8 2.3 0.2 1.0
SG F:CYS5 2.4 0.6 1.0
SG F:CYS26 2.4 0.1 1.0
SG F:CYS29 2.4 0.2 1.0
CB F:CYS8 2.5 0.2 1.0
CB F:CYS29 2.7 0.2 1.0
CA F:CYS26 2.8 0.1 1.0
N F:CYS26 3.1 0.1 1.0
CB F:CYS5 3.4 0.6 1.0
C F:CYS26 3.6 0.1 1.0
CA F:CYS8 3.8 0.2 1.0
O F:CYS26 3.8 0.1 1.0
N F:CYS8 3.9 0.2 1.0
CA F:CYS29 4.0 0.2 1.0
N F:CYS29 4.2 0.2 1.0
OG F:SER10 4.3 0.4 1.0
C F:LEU25 4.4 0.9 1.0
N F:CYS27 4.5 0.1 1.0
C F:LEU7 4.6 0.2 1.0
C F:CYS29 4.8 0.2 1.0
C F:CYS8 4.8 0.2 1.0
N F:GLY99 4.8 0.9 1.0
CA F:CYS5 4.9 0.6 1.0
N F:CYS30 4.9 0.6 1.0

Zinc binding site 5 out of 8 in 7cyq

Go back to Zinc Binding Sites List in 7cyq
Zinc binding site 5 out of 8 in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn703

b:0.0
occ:1.00
 ND1 F:HIS75 2.1 0.1 1.0
SG F:CYS55 2.3 0.2 1.0
SG F:CYS50 2.3 0.0 1.0
SG F:CYS72 2.3 0.2 1.0
CE1 F:HIS75 2.4 0.1 1.0
CG2 F:VAL57 2.7 1.0 1.0
CB F:CYS50 2.8 0.0 1.0
CB F:CYS72 3.1 0.2 1.0
CB F:CYS55 3.3 0.2 1.0
CG F:HIS75 3.5 0.1 1.0
N F:CYS72 3.6 0.2 1.0
NE2 F:HIS75 3.7 0.1 1.0
CA F:CYS72 4.0 0.2 1.0
CB F:VAL57 4.0 1.0 1.0
CG1 F:VAL57 4.2 1.0 1.0
CD2 F:HIS75 4.2 0.1 1.0
CA F:CYS50 4.3 0.0 1.0
CB F:HIS75 4.3 0.1 1.0
OG F:SER74 4.5 0.8 1.0
N F:VAL57 4.5 1.0 1.0
O F:CYS50 4.7 0.0 1.0
CA F:CYS55 4.8 0.2 1.0
C F:TYR71 4.8 0.1 1.0
C F:CYS50 4.8 0.0 1.0
N F:ASP56 4.8 0.6 1.0
CA F:VAL57 4.9 1.0 1.0
C F:CYS72 4.9 0.2 1.0

Zinc binding site 6 out of 8 in 7cyq

Go back to Zinc Binding Sites List in 7cyq
Zinc binding site 6 out of 8 in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn701

b:0.1
occ:1.00
 ND1 E:HIS39 2.0 0.9 1.0
NE2 E:HIS33 2.1 0.6 1.0
SG E:CYS16 2.3 0.5 1.0
SG E:CYS19 2.3 0.9 1.0
CB E:CYS19 2.3 0.9 1.0
CE1 E:HIS33 2.8 0.6 1.0
CE1 E:HIS39 2.9 0.9 1.0
CG E:HIS39 3.1 0.9 1.0
CD2 E:HIS33 3.2 0.6 1.0
CB E:CYS16 3.3 0.5 1.0
CA E:CYS19 3.4 0.9 1.0
CB E:HIS39 3.5 0.9 1.0
N E:CYS19 3.9 0.9 1.0
ND1 E:HIS33 3.9 0.6 1.0
CB E:ALA110 4.0 0.5 1.0
NE2 E:HIS39 4.0 0.9 1.0
CD2 E:HIS39 4.1 0.9 1.0
CG E:HIS33 4.2 0.6 1.0
CE2 E:PHE106 4.6 0.7 1.0
C E:CYS19 4.7 0.9 1.0
CA E:CYS16 4.8 0.5 1.0
C E:ALA18 4.9 0.1 1.0
CA E:HIS39 4.9 0.9 1.0
O E:CYS16 5.0 0.5 1.0

Zinc binding site 7 out of 8 in 7cyq

Go back to Zinc Binding Sites List in 7cyq
Zinc binding site 7 out of 8 in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn702

b:0.9
occ:1.00
 CB E:CYS26 1.4 0.5 1.0
SG E:CYS8 2.3 0.7 1.0
SG E:CYS5 2.4 0.8 1.0
SG E:CYS26 2.4 0.5 1.0
SG E:CYS29 2.4 0.0 1.0
CB E:CYS8 2.5 0.7 1.0
CB E:CYS29 2.7 0.0 1.0
CA E:CYS26 2.8 0.5 1.0
N E:CYS26 3.1 0.5 1.0
CB E:CYS5 3.4 0.8 1.0
C E:CYS26 3.6 0.5 1.0
CA E:CYS8 3.8 0.7 1.0
O E:CYS26 3.8 0.5 1.0
N E:CYS8 3.9 0.7 1.0
CA E:CYS29 4.0 0.0 1.0
N E:CYS29 4.2 0.0 1.0
OG E:SER10 4.3 0.1 1.0
C E:LEU25 4.4 0.2 1.0
N E:CYS27 4.5 0.2 1.0
C E:LEU7 4.6 1.0 1.0
C E:CYS29 4.8 0.0 1.0
C E:CYS8 4.8 0.7 1.0
N E:GLY99 4.8 0.9 1.0
N E:CYS30 4.9 0.2 1.0
CA E:CYS5 4.9 0.8 1.0

Zinc binding site 8 out of 8 in 7cyq

Go back to Zinc Binding Sites List in 7cyq
Zinc binding site 8 out of 8 in the Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn703

b:0.0
occ:1.00
 ND1 E:HIS75 2.1 0.9 1.0
SG E:CYS55 2.3 0.1 1.0
SG E:CYS72 2.3 0.9 1.0
SG E:CYS50 2.3 0.0 1.0
CE1 E:HIS75 2.4 0.9 1.0
CG2 E:VAL57 2.7 0.6 1.0
CB E:CYS50 2.8 0.0 1.0
CB E:CYS72 3.1 0.9 1.0
CB E:CYS55 3.3 0.1 1.0
CG E:HIS75 3.5 0.9 1.0
N E:CYS72 3.6 0.9 1.0
NE2 E:HIS75 3.7 0.9 1.0
CA E:CYS72 4.0 0.9 1.0
CB E:VAL57 4.0 0.6 1.0
CG1 E:VAL57 4.2 0.6 1.0
CD2 E:HIS75 4.2 0.9 1.0
CA E:CYS50 4.3 0.0 1.0
CB E:HIS75 4.3 0.9 1.0
OG E:SER74 4.5 0.7 1.0
N E:VAL57 4.5 0.6 1.0
O E:CYS50 4.7 0.0 1.0
CA E:CYS55 4.8 0.1 1.0
C E:TYR71 4.8 0.7 1.0
C E:CYS50 4.8 0.0 1.0
N E:ASP56 4.8 0.9 1.0
CA E:VAL57 4.9 0.6 1.0
C E:CYS72 4.9 0.9 1.0

Reference:

L.Yan, J.Ge, L.Zheng, Y.Zhang, Y.Gao, T.Wang, Y.Huang, Y.Yang, S.Gao, M.Li, Z.Liu, H.Wang, Y.Li, Y.Chen, L.W.Guddat, Q.Wang, Z.Rao, Z.Lou. Cryo-Em Structure of An Extended Sars-Cov-2 Replication and Transcription Complex Reveals An Intermediate State in Cap Synthesis. Cell 2020.
ISSN: ISSN 1097-4172
PubMed: 33232691
DOI: 10.1016/J.CELL.2020.11.016
Page generated: Tue Oct 29 18:30:33 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy