Zinc in PDB 7bl4: In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle

The structure of In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle also contains other interesting chemical elements:

Magnesium

(Mg)

6 atoms

The binding sites of Zinc atom in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle (pdb code 7bl4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle, PDB code: 7bl4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle within 5.0Å range: probe atom residue distance (Å) B Occ g:Zn101 b:126.8 occ:1.00 ND1 g:HIS33 2.1 107.4 1.0 SG g:CYS11 2.3 111.0 1.0 SG g:CYS14 2.3 109.5 1.0 SG g:CYS27 2.3 109.9 1.0 CG g:HIS33 2.6 107.4 1.0 CE1 g:HIS33 2.7 107.4 1.0 CB g:HIS33 3.2 107.4 1.0 CD2 g:HIS33 3.3 107.4 1.0 NE2 g:HIS33 3.4 107.4 1.0 CB g:CYS27 3.5 109.9 1.0 CB g:CYS11 3.7 111.0 1.0 CB g:CYS14 3.9 109.5 1.0 O g:ASN13 4.0 110.7 1.0 N g:CYS11 4.0 111.0 1.0 C g:ASN13 4.1 110.7 1.0 N g:CYS14 4.2 109.5 1.0 CA g:CYS14 4.3 109.5 1.0 CA g:CYS11 4.3 111.0 1.0 CA g:CYS27 4.6 109.9 1.0 O g:CYS11 4.6 111.0 1.0 C g:CYS11 4.6 111.0 1.0 CA g:HIS33 4.6 107.4 1.0 N g:ASN13 4.8 110.7 1.0 CA g:ASN13 4.8 110.7 1.0 CB g:ASN13 4.9 110.7 1.0

Zinc binding site 2 out of 2 in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle within 5.0Å range: probe atom residue distance (Å) B Occ d:Zn100 b:250.8 occ:1.00 SG d:CYS37 2.3 231.8 1.0 SG d:CYS16 2.3 233.5 1.0 CB d:CYS37 2.8 231.8 1.0 N d:CYS37 2.9 231.8 1.0 CB d:CYS18 2.9 234.8 1.0 SG d:CYS18 3.1 234.8 1.0 C d:VAL36 3.3 230.1 1.0 CA d:CYS37 3.4 231.8 1.0 CB d:CYS16 3.5 233.5 1.0 CA d:VAL36 3.7 230.1 1.0 N d:CYS18 3.9 234.8 1.0 CA d:CYS18 4.0 234.8 1.0 O d:VAL36 4.0 230.1 1.0 CB d:ASN20 4.3 228.8 1.0 C d:CYS37 4.4 231.8 1.0 O d:LYS39 4.4 227.2 1.0 SG d:CYS40 4.5 230.8 1.0 O d:ASP35 4.5 230.8 1.0 C d:CYS18 4.6 234.8 1.0 N d:VAL36 4.6 230.1 1.0 CB d:VAL36 4.7 230.1 1.0 O d:CYS37 4.8 231.8 1.0 N d:ASN20 4.8 228.8 1.0 CA d:CYS16 4.9 233.5 1.0 N d:GLY19 4.9 231.3 1.0 C d:ASP35 4.9 230.8 1.0 N d:SER17 5.0 233.4 1.0

R.Nikolay, T.Hilal, S.Schmidt, B.Qin, D.Schwefel, C.H.Vieira-Vieira, T.Mielke, J.Burger, J.Loerke, K.Amikura, T.Flugel, T.Ueda, M.Selbach, E.Deuerling, C.M.T.Spahn. Snapshots of Native Pre-50S Ribosomes Reveal A Biogenesis Factor Network and Evolutionary Specialization. Mol.Cell V. 81 1200 2021.
ISSN: ISSN 1097-2765
PubMed: 33639093
DOI: 10.1016/J.MOLCEL.2021.02.006