Zinc in PDB 7agi: The Structure of Artemis Variant H35D

Protein crystallography data

The structure of The Structure of Artemis Variant H35D, PDB code: 7agi was solved by Y.Yosaatmadja, S.Goubin, J.A.Newman, S.M.M.Mukhopadhyay, A.A.Dannerfjord, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.62 / 1.70
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.968, 48.046, 48.445, 82.43, 76.01, 87.34
R / Rfree (%) 19 / 21

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of Artemis Variant H35D (pdb code 7agi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Structure of Artemis Variant H35D, PDB code: 7agi:

Zinc binding site 1 out of 1 in 7agi

Go back to Zinc Binding Sites List in 7agi
Zinc binding site 1 out of 1 in the The Structure of Artemis Variant H35D


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of Artemis Variant H35D within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:11.4
occ:1.00
ND1 A:HIS254 2.1 11.4 1.0
ND1 A:HIS228 2.2 13.1 1.0
SG A:CYS256 2.3 13.3 1.0
SG A:CYS272 2.3 13.1 1.0
CE1 A:HIS254 3.0 11.3 1.0
CE1 A:HIS228 3.0 13.7 1.0
CB A:CYS272 3.2 13.8 1.0
CG A:HIS254 3.3 11.0 1.0
CG A:HIS228 3.3 13.5 1.0
CB A:CYS256 3.3 13.6 1.0
CB A:HIS254 3.7 11.0 1.0
CB A:HIS228 3.7 13.5 1.0
NE2 A:HIS228 4.1 13.6 1.0
NE2 A:HIS254 4.2 11.4 1.0
N A:CYS272 4.2 14.4 1.0
CD2 A:HIS228 4.3 13.6 1.0
CD2 A:HIS254 4.3 11.3 1.0
CA A:CYS272 4.3 14.2 1.0
CB A:ARG249 4.5 17.8 1.0
N A:CYS256 4.5 13.7 1.0
CA A:CYS256 4.5 14.0 1.0
CA A:HIS254 4.7 11.2 1.0
CD2 A:LEU270 4.8 18.1 1.0
CB A:LEU270 4.8 18.6 1.0
O A:HOH569 4.9 34.6 1.0
CA A:ARG249 4.9 17.4 1.0

Reference:

Y.Yosaatmadja, S.Goubin, J.A.Newman, S.M.M.Mukhopadhyay, A.A.Dannerfjord, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, O.Gileadi. The Structure of Artemis Variant H35D To Be Published.
Page generated: Wed Dec 16 13:35:03 2020

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