Zinc in PDB 7afz: L1 Metallo-B-Lactamase with Compound Ebl-1306

All present enzymatic activity of L1 Metallo-B-Lactamase with Compound Ebl-1306:
3.5.2.6;

The structure of L1 Metallo-B-Lactamase with Compound Ebl-1306, PDB code: 7afz was solved by P.Hinchliffe, J.Spencer, J.Brem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	66.62 / 1.50
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	104.78, 104.78, 98.11, 90, 90, 120
R / Rfree (%)	15.2 / 16.8

The structure of L1 Metallo-B-Lactamase with Compound Ebl-1306 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the L1 Metallo-B-Lactamase with Compound Ebl-1306 (pdb code 7afz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the L1 Metallo-B-Lactamase with Compound Ebl-1306, PDB code: 7afz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the L1 Metallo-B-Lactamase with Compound Ebl-1306


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of L1 Metallo-B-Lactamase with Compound Ebl-1306 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:17.6 occ:1.00 O A:HOH414 2.0 19.8 1.0 NE2 A:HIS225 2.0 15.7 1.0 NE2 A:HIS89 2.0 16.3 1.0 OD2 A:ASP88 2.1 17.0 1.0 O09 A:RBW303 2.2 19.5 1.0 H061 A:RBW303 2.5 33.3 1.0 CG A:ASP88 2.9 17.2 1.0 N06 A:RBW303 2.9 27.7 1.0 CE1 A:HIS89 2.9 17.6 1.0 CE1 A:HIS225 3.0 20.2 1.0 CD2 A:HIS225 3.0 15.6 1.0 CD2 A:HIS89 3.0 16.0 1.0 C08 A:RBW303 3.1 22.1 1.0 HE1 A:HIS89 3.1 21.2 1.0 HE1 A:HIS225 3.2 24.3 1.0 OD1 A:ASP88 3.2 16.9 1.0 HD2 A:HIS225 3.2 18.7 1.0 HD2 A:HIS89 3.3 19.2 1.0 C07 A:RBW303 3.3 26.4 1.0 ZN A:ZN302 3.6 15.6 1.0 HE1 A:HIS84 3.6 17.3 1.0 HG A:SER185 3.7 22.3 1.0 H021 A:RBW303 3.7 50.0 1.0 C05 A:RBW303 4.0 32.0 1.0 ND1 A:HIS89 4.1 16.2 1.0 ND1 A:HIS225 4.1 19.7 1.0 CG A:HIS89 4.1 16.7 1.0 NE2 A:HIS84 4.1 14.0 1.0 CG A:HIS225 4.2 17.1 1.0 CE1 A:HIS84 4.2 14.4 1.0 O10 A:RBW303 4.2 21.1 1.0 CB A:ASP88 4.3 14.4 1.0 HB2 A:ASP88 4.3 17.3 1.0 OG A:SER185 4.5 18.6 1.0 C11 A:RBW303 4.5 33.8 1.0 C02 A:RBW303 4.6 41.7 1.0 HB2 A:PRO224 4.7 16.7 1.0 HB2 A:HIS86 4.7 15.2 1.0 HH2 A:TRP17 4.7 27.8 1.0 NE2 A:HIS160 4.7 15.6 1.0 C04 A:RBW303 4.7 37.8 1.0 HZ3 A:TRP17 4.8 24.1 1.0 HD1 A:HIS89 4.8 19.5 1.0 C12 A:RBW303 4.8 34.3 1.0 HB3 A:ASP88 4.8 17.3 1.0 HD1 A:HIS225 4.9 23.7 1.0 HD21 A:LEU38 4.9 22.2 1.0 HD22 A:LEU38 4.9 22.2 1.0 H271 A:RBW303 5.0 62.1 1.0 HE1 A:HIS160 5.0 20.2 1.0

Zinc binding site 2 out of 2 in the L1 Metallo-B-Lactamase with Compound Ebl-1306


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of L1 Metallo-B-Lactamase with Compound Ebl-1306 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:15.6 occ:1.00 NE2 A:HIS84 2.0 14.0 1.0 ND1 A:HIS86 2.0 12.6 1.0 NE2 A:HIS160 2.1 15.6 1.0 O A:HOH414 2.1 19.8 1.0 CD2 A:HIS160 2.9 14.8 1.0 CE1 A:HIS84 3.0 14.4 1.0 CE1 A:HIS86 3.0 14.0 1.0 CD2 A:HIS84 3.0 13.5 1.0 HB2 A:HIS86 3.0 15.2 1.0 HD2 A:HIS160 3.0 17.8 1.0 CG A:HIS86 3.1 12.2 1.0 H061 A:RBW303 3.1 33.3 1.0 HE1 A:HIS86 3.1 16.8 1.0 CE1 A:HIS160 3.1 16.8 1.0 HE1 A:HIS84 3.2 17.3 1.0 HD2 A:HIS84 3.2 16.2 1.0 O09 A:RBW303 3.3 19.5 1.0 HE1 A:HIS160 3.4 20.2 1.0 CB A:HIS86 3.4 12.7 1.0 HD2 A:HIS89 3.5 19.2 1.0 ZN A:ZN301 3.6 17.6 1.0 HB3 A:HIS86 3.6 15.2 1.0 N06 A:RBW303 3.9 27.7 1.0 H021 A:RBW303 4.0 50.0 1.0 ND1 A:HIS84 4.0 14.1 1.0 H032 A:RBW303 4.1 52.1 1.0 OD1 A:ASP88 4.1 16.9 1.0 CG A:HIS84 4.1 14.4 1.0 NE2 A:HIS86 4.1 15.3 1.0 CG A:HIS160 4.1 13.9 1.0 CD2 A:HIS89 4.1 16.0 1.0 C08 A:RBW303 4.2 22.1 1.0 CD2 A:HIS86 4.2 15.0 1.0 ND1 A:HIS160 4.2 16.6 1.0 NE2 A:HIS89 4.2 16.3 1.0 HG A:SER185 4.3 22.3 1.0 HG23 A:THR161 4.3 15.2 1.0 H031 A:RBW303 4.5 52.1 1.0 C07 A:RBW303 4.5 26.4 1.0 C03 A:RBW303 4.6 43.4 1.0 HE2 A:PHE124 4.6 71.5 1.0 HB2 A:SER185 4.7 20.1 1.0 H A:HIS86 4.8 16.2 1.0 C02 A:RBW303 4.8 41.7 1.0 OD2 A:ASP88 4.8 17.0 1.0 HD1 A:HIS84 4.8 16.9 1.0 CA A:HIS86 4.9 12.5 1.0 HE2 A:HIS86 4.9 18.4 1.0 CG A:ASP88 4.9 17.2 1.0 C05 A:RBW303 5.0 32.0 1.0 HG21 A:THR161 5.0 15.2 1.0 HD1 A:HIS160 5.0 19.9 1.0

P.Hinchliffe, J.Spencer, J.Brem. L1 Metallo-B-Lactamase with Compound Ebl-1306 To Be Published.