Zinc in PDB 7afu: The Structure of Artemis Variant H33A

Protein crystallography data

The structure of The Structure of Artemis Variant H33A, PDB code: 7afu was solved by Y.Yosaatmadja, S.Goubin, J.A.Newman, S.M.M.Mukhopadhyay, A.A.Dannerfjord, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.53 / 1.56
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.966, 47.897, 48.373, 82.51, 75.94, 87.73
R / Rfree (%) 18.8 / 21.3

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of Artemis Variant H33A (pdb code 7afu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Structure of Artemis Variant H33A, PDB code: 7afu:

Zinc binding site 1 out of 1 in 7afu

Go back to Zinc Binding Sites List in 7afu
Zinc binding site 1 out of 1 in the The Structure of Artemis Variant H33A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of Artemis Variant H33A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:10.9
occ:1.00
ND1 A:HIS254 2.2 10.9 1.0
ND1 A:HIS228 2.2 13.2 1.0
SG A:CYS272 2.3 12.7 1.0
SG A:CYS256 2.3 10.8 1.0
CE1 A:HIS228 3.0 13.7 1.0
CE1 A:HIS254 3.0 10.8 1.0
CB A:CYS272 3.2 13.5 1.0
CG A:HIS254 3.3 10.5 1.0
CG A:HIS228 3.3 13.2 1.0
CB A:CYS256 3.3 11.2 1.0
CB A:HIS254 3.7 10.4 1.0
CB A:HIS228 3.7 13.1 1.0
NE2 A:HIS228 4.2 13.8 1.0
NE2 A:HIS254 4.2 10.9 1.0
N A:CYS272 4.2 14.4 1.0
CD2 A:HIS228 4.3 13.5 1.0
CA A:CYS272 4.3 14.1 1.0
CD2 A:HIS254 4.3 10.5 1.0
CB A:ARG249 4.5 18.2 1.0
CA A:CYS256 4.5 11.5 1.0
N A:CYS256 4.5 11.0 1.0
CA A:HIS254 4.6 10.4 1.0
CD2 A:LEU270 4.8 16.6 1.0
CB A:LEU270 4.8 16.3 1.0
CA A:ARG249 4.9 17.3 1.0
O A:HOH697 5.0 30.4 1.0
CD1 A:LEU270 5.0 16.4 1.0

Reference:

Y.Yosaatmadja, S.Goubin, J.A.Newman, S.M.M.Mukhopadhyay, A.A.Dannerfjord, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, O.Gileadi. The Structure of Artemis Variant H335A To Be Published.
Page generated: Wed Dec 16 13:34:59 2020

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