Zinc in PDB 7aap: NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp

All present enzymatic activity of NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp:
2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13;

The structure of NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp also contains other interesting chemical elements:

Fluorine	(F)	1 atom
Magnesium	(Mg)	3 atoms

The binding sites of Zinc atom in the NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp (pdb code 7aap). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp, PDB code: 7aap:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:71.6 occ:1.00 ND1 A:HIS295 2.1 45.2 1.0 SG A:CYS301 2.3 49.6 1.0 SG A:CYS306 2.3 46.1 1.0 SG A:CYS310 2.3 41.6 1.0 CE1 A:HIS295 3.0 45.2 1.0 CG A:HIS295 3.1 45.2 1.0 CB A:CYS301 3.3 49.6 1.0 O A:CYS306 3.3 46.1 1.0 CB A:CYS310 3.5 41.6 1.0 CB A:HIS295 3.5 45.2 1.0 CA A:CYS301 3.6 49.6 1.0 CB A:CYS306 3.7 46.1 1.0 C A:CYS306 3.8 46.1 1.0 NE2 A:HIS295 4.1 45.2 1.0 CD2 A:HIS295 4.2 45.2 1.0 CA A:CYS306 4.2 46.1 1.0 N A:HIS295 4.3 45.2 1.0 N A:CYS301 4.4 49.6 1.0 CA A:HIS295 4.5 45.2 1.0 N A:ILE307 4.6 42.2 1.0 CA A:CYS310 4.7 41.6 1.0 N A:LEU302 4.8 50.9 1.0 C A:CYS301 4.8 49.6 1.0 N A:CYS310 4.8 41.6 1.0 O A:HIS295 4.9 45.2 1.0 O A:THR293 5.0 45.3 1.0

Zinc binding site 2 out of 2 in the NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1002 b:71.0 occ:1.00 ND1 A:HIS642 2.1 49.7 1.0 SG A:CYS646 2.3 55.4 1.0 SG A:CYS645 2.3 57.2 1.0 SG A:CYS487 2.3 52.2 1.0 CE1 A:HIS642 3.0 49.7 1.0 CG A:HIS642 3.1 49.7 1.0 CB A:CYS487 3.4 52.2 1.0 CB A:HIS642 3.4 49.7 1.0 CB A:CYS646 3.6 55.4 1.0 CB A:CYS645 3.7 57.2 1.0 CE1 A:PHE571 3.8 47.3 1.0 N A:CYS487 3.9 52.2 1.0 C A:CYS645 4.1 57.2 1.0 N A:CYS646 4.1 55.4 1.0 NE2 A:HIS642 4.1 49.7 1.0 CA A:CYS487 4.1 52.2 1.0 CD1 A:PHE571 4.2 47.3 1.0 CD2 A:HIS642 4.2 49.7 1.0 O A:CYS645 4.3 57.2 1.0 CA A:CYS646 4.4 55.4 1.0 CA A:HIS642 4.4 49.7 1.0 CA A:CYS645 4.5 57.2 1.0 CZ A:PHE571 4.7 47.3 1.0 C A:GLY486 4.8 48.6 1.0 O A:HIS642 4.9 49.7 1.0 CE A:LYS532 5.0 48.6 1.0

K.Naydenova, K.W.Muir, L.F.Wu, Z.Zhang, F.Coscia, M.Peet, P.Castro-Hartman, P.Qian, K.Sader, K.Dent, D.Kimanius, J.D.Sutherland, J.Loewe, D.Barford, C.J.Russo. NSP7-NSP8-NSP12 Sars-COV2 Rna-Dependent Rna Polymerase in Complex with Template:Primer Dsrna and Favipiravir-Rtp To Be Published.