Zinc in PDB 7a9p: Racemic Compound of Rna Duplexes.

The structure of Racemic Compound of Rna Duplexes., PDB code: 7a9p was solved by W.Rypniewski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.11 / 1.99
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	21.231, 26.617, 38.935, 105.6, 97.71, 90.81
R / Rfree (%)	23.5 / 32.6

The binding sites of Zinc atom in the Racemic Compound of Rna Duplexes. (pdb code 7a9p). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Racemic Compound of Rna Duplexes., PDB code: 7a9p:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn101 b:19.5 occ:0.60 O K:HOH215 2.0 17.9 1.0 N7 K:0G82 2.1 17.4 1.0 O K:HOH229 2.1 24.3 1.0 O K:HOH201 2.2 15.9 1.0 O K:HOH210 2.3 21.2 1.0 O K:HOH202 2.5 28.6 1.0 C8 K:0G82 3.1 16.6 1.0 C5 K:0G82 3.2 15.7 1.0 O6 K:0G82 3.4 17.9 1.0 C6 K:0G82 3.7 16.8 1.0 O K:HOH222 3.9 22.4 1.0 OP1 K:0G82 3.9 18.9 1.0 O K:HOH209 3.9 23.3 1.0 O L:HOH236 4.0 42.0 1.0 N9 K:0G82 4.3 15.2 1.0 C4 K:0G82 4.3 16.6 1.0 N7 K:0G81 4.4 18.9 1.0 O6 K:0G83 4.6 21.4 1.0 C8 K:0G81 4.6 18.3 1.0 OP1 K:0G81 4.6 26.8 1.0 N7 K:0G83 4.6 16.4 1.0 C5 K:0G81 4.7 17.4 1.0 O5' K:0G82 4.9 15.9 1.0

Zinc binding site 2 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn102 b:43.4 occ:0.80 O K:HOH217 2.1 29.6 1.0 O K:HOH216 2.4 20.8 1.0 N7 K:0G85 3.2 25.8 1.0 O L:HOH233 3.5 38.2 1.0 O M:HOH210 3.9 28.9 1.0 C8 K:0G85 4.0 23.0 1.0 O6 K:0G85 4.1 25.2 1.0 C5 K:0G85 4.1 23.1 1.0 O6 K:0G86 4.2 15.5 1.0 N7 K:0G86 4.3 15.4 1.0 C6 K:0G85 4.5 24.1 1.0 OP1 K:0G85 4.6 30.1 1.0 O K:HOH218 4.8 23.2 1.0 N4 K:0C84 4.8 20.9 1.0 C4 K:0C84 4.8 22.6 1.0 C5 K:0C84 4.9 22.7 1.0 O2 M:C79 4.9 15.4 1.0 C6 K:0G86 4.9 15.4 1.0 C5 K:0G86 5.0 15.8 1.0

Zinc binding site 3 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn101 b:45.8 occ:1.00 O L:HOH213 1.9 20.7 1.0 O L:HOH231 2.5 37.6 1.0 O L:HOH223 2.6 40.0 1.0 N7 L:0G96 3.9 20.3 1.0 O6 L:0G97 4.1 18.5 1.0 O L:HOH222 4.2 35.1 1.0 N7 L:0G97 4.3 17.1 1.0 C8 L:0G96 4.5 21.5 1.0 OP1 L:0G96 4.7 21.2 1.0 C6 L:0G97 4.9 18.1 1.0 C5 L:0G96 5.0 19.4 1.0 C5 L:0G97 5.0 17.9 1.0

Zinc binding site 4 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn102 b:57.0 occ:0.80 O L:HOH227 2.2 32.1 1.0 OP1 L:0U95 4.1 19.2 1.0 OP2 L:0U95 4.2 18.7 1.0 OP2 L:0C94 4.6 13.5 1.0 P L:0U95 4.7 19.0 1.0

Zinc binding site 5 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn101 b:18.0 occ:0.50 O M:HOH218 1.9 36.8 1.0 O M:HOH220 1.9 23.3 1.0 O M:HOH223 2.2 22.8 1.0 O M:HOH211 2.3 28.4 1.0 N7 M:G82 2.3 15.8 1.0 O M:HOH236 2.5 38.6 1.0 C8 M:G82 3.1 16.4 1.0 C5 M:G82 3.3 15.8 1.0 O6 M:G82 3.7 15.5 1.0 O N:HOH229 3.8 35.8 1.0 O M:HOH217 3.8 22.2 1.0 C6 M:G82 3.9 16.7 1.0 OP2 M:G82 4.0 17.1 1.0 O M:HOH222 4.0 23.0 1.0 N9 M:G82 4.3 15.8 1.0 N7 M:G81 4.4 16.8 1.0 C4 M:G82 4.5 16.1 1.0 OP2 M:G81 4.6 19.5 1.0 O6 M:G83 4.6 17.8 1.0 C8 M:G81 4.7 15.7 1.0 O N:HOH235 4.7 41.6 1.0 C5 M:G81 4.8 17.5 1.0 O5' M:G82 4.9 16.7 1.0 N7 M:G83 4.9 14.8 1.0 O M:HOH234 4.9 39.0 1.0 O M:HOH206 5.0 28.2 1.0

Zinc binding site 6 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn102 b:39.2 occ:1.00 O M:HOH203 2.0 19.1 1.0 O M:HOH205 2.2 29.4 1.0 O M:HOH233 2.5 42.3 1.0 N7 M:G85 2.7 19.3 1.0 C8 M:G85 3.6 18.6 1.0 C5 M:G85 3.6 17.3 1.0 O6 M:G85 3.7 16.4 1.0 C6 M:G85 4.0 18.6 1.0 OP2 M:G85 4.1 19.1 1.0 C5 M:C84 4.4 17.7 1.0 C4 M:C84 4.5 16.8 1.0 N7 M:G86 4.5 13.3 1.0 O M:HOH204 4.6 23.0 1.0 N4 M:C84 4.6 16.7 1.0 O M:HOH225 4.7 25.4 1.0 O6 M:G86 4.7 13.4 1.0 N9 M:G85 4.7 18.0 1.0 C4 M:G85 4.8 17.8 1.0 C6 M:C84 4.8 17.4 1.0 N3 M:C84 4.9 17.4 1.0

Zinc binding site 7 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:34.5 occ:0.80 O N:HOH232 1.9 23.1 1.0 O N:HOH207 2.1 26.7 1.0 O N:HOH246 2.3 21.4 1.0 O N:HOH239 2.3 41.8 1.0 O N:HOH202 2.8 25.0 1.0 N7 N:G96 3.8 21.2 1.0 O N:HOH219 3.8 50.2 1.0 O6 N:G97 4.4 16.6 1.0 N7 N:G97 4.5 16.0 1.0 OP2 N:G96 4.5 34.6 1.0 C8 N:G96 4.5 21.5 1.0 C5 N:U95 4.6 19.1 1.0 C4 N:U95 4.7 17.4 1.0 O4 N:U95 4.8 15.2 1.0 O N:HOH208 4.8 27.1 1.0 C5 N:G96 4.8 21.2 1.0 O6 N:G96 4.9 20.7 1.0

W.Rypniewski, A.Kiliszek, L.Blaszczyk, M.Bejger. Racemic Compound of Rna Duplexes. To Be Published.