Zinc in PDB 7a9n: Racemic Compound of Rna Duplexes.

The structure of Racemic Compound of Rna Duplexes., PDB code: 7a9n was solved by W.Rypniewski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.90 / 1.60
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	21.094, 26.974, 38.844, 106.56, 96.9, 91.6
R / Rfree (%)	18.1 / 22.4

The binding sites of Zinc atom in the Racemic Compound of Rna Duplexes. (pdb code 7a9n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Racemic Compound of Rna Duplexes., PDB code: 7a9n:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn101 b:23.0 occ:0.80 O K:HOH217 2.0 20.3 1.0 O K:HOH222 2.1 17.9 1.0 O K:HOH202 2.1 19.9 1.0 N7 K:G82 2.1 14.7 1.0 O K:HOH239 2.2 17.8 1.0 O K:HOH203 2.2 19.2 1.0 C8 K:G82 3.0 14.5 1.0 C5 K:G82 3.2 13.7 1.0 O6 K:G82 3.7 14.3 1.0 C6 K:G82 3.8 15.4 1.0 O K:HOH219 4.0 17.0 1.0 OP2 K:G82 4.0 15.4 1.0 O K:HOH229 4.1 20.9 0.5 O K:HOH206 4.2 13.6 0.5 N9 K:G82 4.2 14.4 1.0 C4 K:G82 4.3 14.0 1.0 N7 K:G81 4.5 17.1 1.0 O6 K:G83 4.5 16.4 1.0 OP2 K:G81 4.6 20.4 1.0 N7 K:G83 4.7 16.3 1.0 C8 K:G81 4.8 15.7 1.0 C5 K:G81 4.8 15.9 1.0 O5' K:G82 4.9 15.4 1.0

Zinc binding site 2 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn102 b:40.9 occ:0.80 O K:HOH205 1.9 27.9 1.0 O K:HOH218 2.1 23.3 1.0 O K:HOH201 2.4 29.3 1.0 O K:HOH209 3.5 17.6 0.5 O M:HOH203 3.6 36.1 1.0 N7 K:G85 3.8 22.1 1.0 O K:HOH225 3.8 17.2 0.5 O K:HOH213 4.1 32.5 1.0 O6 K:G86 4.1 15.6 1.0 O6 K:G85 4.2 19.8 1.0 N7 K:G86 4.4 13.8 1.0 C5 K:G85 4.6 19.7 1.0 O2 M:0C79 4.6 19.6 1.0 C8 K:G85 4.7 18.9 1.0 C6 K:G85 4.7 20.0 1.0 C1' M:0C79 4.9 22.4 1.0 C6 K:G86 4.9 14.4 1.0 O2' M:0C79 5.0 23.4 1.0

Zinc binding site 3 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn101 b:51.1 occ:0.80 O L:HOH210 2.0 23.9 1.0 O L:HOH243 2.1 33.1 1.0 O L:HOH211 2.2 23.2 1.0 O L:HOH234 2.4 33.7 1.0 O L:HOH222 3.8 39.8 1.0 O K:HOH238 3.9 35.1 1.0 O L:HOH217 4.1 33.2 1.0 N7 L:G96 4.2 16.5 1.0 O6 L:G97 4.3 17.5 1.0 N7 L:G97 4.3 16.0 1.0 C8 L:G96 4.9 17.2 1.0 O L:HOH212 4.9 38.2 1.0

Zinc binding site 4 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn102 b:70.4 occ:0.50 O L:HOH225 2.5 23.7 1.0 O L:HOH219 2.7 40.9 1.0 O L:HOH240 4.0 45.9 1.0 OP1 L:U95 4.2 21.5 1.0 OP2 L:U95 4.4 19.8 1.0 P L:U95 4.8 18.2 1.0 OP1 L:C94 4.9 21.0 1.0

Zinc binding site 5 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn101 b:24.5 occ:0.60 O M:HOH221 2.0 21.6 1.0 O M:HOH213 2.1 20.9 1.0 O M:HOH228 2.1 23.1 1.0 O M:HOH242 2.2 22.3 1.0 N7 M:0G82 2.2 14.7 1.0 O M:HOH212 2.2 22.5 1.0 C8 M:0G82 3.1 15.1 1.0 C5 M:0G82 3.3 15.9 1.0 O6 M:0G82 3.6 19.5 1.0 C6 M:0G82 3.8 19.2 1.0 O M:HOH225 3.9 24.0 1.0 OP1 M:0G82 3.9 16.0 1.0 O N:HOH229 4.2 26.6 1.0 O M:HOH236 4.3 18.3 0.5 N9 M:0G82 4.3 14.9 1.0 O M:HOH206 4.3 16.9 0.5 C4 M:0G82 4.4 15.7 1.0 N7 M:0G81 4.5 19.9 1.0 O6 M:0G83 4.6 21.6 1.0 C8 M:0G81 4.7 18.6 1.0 N7 M:0G83 4.7 15.7 1.0 OP1 M:0G81 4.8 20.2 1.0 C5 M:0G81 4.8 18.1 1.0 O5' M:0G82 4.9 17.5 1.0

Zinc binding site 6 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn102 b:57.2 occ:0.80 O M:HOH209 2.2 25.6 1.0 O M:HOH226 2.3 27.8 1.0 O M:HOH202 2.6 45.0 1.0 N7 M:0G85 2.8 20.1 1.0 O M:HOH230 3.2 29.8 1.0 C8 M:0G85 3.6 18.4 1.0 O M:HOH240 3.8 36.8 1.0 C5 M:0G85 3.8 18.1 1.0 O6 M:0G85 4.0 21.6 1.0 O M:HOH210 4.1 41.3 1.0 C5 M:0C84 4.2 16.4 1.0 C4 M:0C84 4.2 15.9 1.0 C6 M:0G85 4.3 19.2 1.0 OP1 M:0G85 4.3 20.8 1.0 N4 M:0C84 4.3 16.4 1.0 N7 M:0G86 4.5 15.3 1.0 O6 M:0G86 4.7 13.3 1.0 C6 M:0C84 4.7 15.7 1.0 N3 M:0C84 4.7 16.5 1.0 N9 M:0G85 4.9 18.5 1.0 C4 M:0G85 5.0 17.3 1.0

Zinc binding site 7 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:53.5 occ:0.80 O N:HOH239 2.0 29.0 1.0 O N:HOH201 2.0 33.5 1.0 O N:HOH210 2.1 26.3 1.0 O L:HOH237 2.2 31.6 1.0 O L:HOH242 2.4 35.1 1.0 O N:HOH223 2.6 39.7 1.0 O N:HOH216 3.9 35.1 1.0 N7 N:0G96 4.0 19.9 1.0 O K:HOH237 4.4 34.2 1.0 N7 N:0G97 4.5 15.7 1.0 O6 N:0G97 4.5 21.1 1.0 O L:HOH239 4.5 33.0 1.0 C8 N:0G96 4.6 21.2 1.0 OP1 N:0G96 4.7 29.7 1.0 C4 N:0U95 4.8 18.8 1.0 C5 N:0U95 4.8 18.1 1.0 O4 N:0U95 4.8 19.6 1.0 O N:HOH208 4.8 37.5 1.0

W.Rypniewski, A.Kiliszek, L.Blaszczyk, M.Bejger. Racemic Compound of Rna Duplexes. To Be Published.