Zinc in PDB 7a4m: Cryo-Em Structure of Mouse Heavy-Chain Apoferritin at 1.22 A

All present enzymatic activity of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin at 1.22 A:
1.16.3.1;

The structure of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin at 1.22 A also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Zinc atom in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin at 1.22 A (pdb code 7a4m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin at 1.22 A, PDB code: 7a4m:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Mouse Heavy-Chain Apoferritin at 1.22 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Mouse Heavy-Chain Apoferritin at 1.22 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:29.8 occ:0.50 HD1 A:HIS65 1.2 28.0 0.0 OE2 A:GLU27 1.9 33.9 1.0 ND1 A:HIS65 2.1 22.8 0.5 O A:HOH312 2.1 41.0 1.0 OE1 A:GLU62 2.1 41.3 1.0 O A:HOH308 2.4 41.3 0.5 HD2 A:HIS65 2.4 59.7 0.5 CD A:GLU62 2.9 36.4 1.0 CD A:GLU27 2.9 32.6 1.0 CE1 A:HIS65 3.0 28.8 0.5 OE2 A:GLU62 3.0 67.3 1.0 CD2 A:HIS65 3.1 47.7 0.5 HE1 A:HIS65 3.1 27.0 0.5 CG A:HIS65 3.1 23.2 0.5 OE1 A:GLU27 3.3 32.2 1.0 HB2 A:HIS65 3.3 20.4 0.5 HB2 A:HIS65 3.3 22.0 0.5 HB3 A:HIS65 3.4 21.7 0.5 HB3 A:HIS65 3.4 19.3 0.5 CB A:HIS65 3.5 20.1 0.5 HG12 A:VAL110 3.5 21.4 1.0 HA A:GLU62 3.6 17.2 1.0 CG A:HIS65 3.6 33.0 0.5 CB A:HIS65 3.6 22.1 0.5 OE1 A:GLN141 3.9 39.6 1.0 O A:HOH323 4.0 43.3 1.0 NE2 A:HIS65 4.1 26.9 0.5 CG A:GLU27 4.2 24.1 1.0 NE2 A:HIS65 4.2 83.7 0.5 CD2 A:HIS65 4.2 22.5 0.5 HB3 A:GLU27 4.2 18.6 1.0 CG A:GLU62 4.2 22.0 1.0 HG11 A:VAL110 4.3 22.6 1.0 CG1 A:VAL110 4.3 22.8 1.0 HE2 A:HIS65 4.5 28.0 0.0 CA A:GLU62 4.5 17.4 1.0 HA A:GLU27 4.5 15.5 1.0 HB3 A:GLU62 4.5 18.7 1.0 HD1 A:TYR137 4.5 19.5 1.0 O A:HOH324 4.5 56.9 1.0 HG3 A:GLU27 4.6 23.8 1.0 HE1 A:TYR137 4.6 19.0 1.0 CB A:GLU62 4.6 18.5 1.0 CB A:GLU27 4.7 18.7 1.0 HG3 A:GLU62 4.8 22.7 1.0 CD A:GLN141 4.8 26.4 1.0 HG2 A:GLU62 4.8 23.0 1.0 HG13 A:VAL110 4.8 22.1 1.0 ND1 A:HIS65 4.8 48.5 0.5 HG2 A:GLU27 4.9 23.7 1.0 HE2 A:HIS65 4.9 28.0 0.0 HE21 A:GLN141 4.9 31.3 1.0 HG22 A:VAL110 4.9 21.2 1.0 O A:GLU62 5.0 16.8 1.0

T.Nakane, A.Kotecha, A.Sente, G.Mcmullan, S.Masiulis, P.M.G.E.Brown, I.T.Grigoras, L.Malinauskaite, T.Malinauskas, J.Miehling, T.Uchanski, L.Yu, D.Karia, E.V.Pechnikova, E.De Jong, J.Keizer, M.Bischoff, J.Mccormack, P.Tiemeijer, S.W.Hardwick, D.Y.Chirgadze, G.Murshudov, A.R.Aricescu, S.H.W.Scheres. Single-Particle Cryo-Em at Atomic Resolution. Nature V. 587 152 2020.
ISSN: ESSN 1476-4687
PubMed: 33087931
DOI: 10.1038/S41586-020-2829-0