Zinc in PDB 6zwu: Racemic Compound of Rna Duplexes.

The structure of Racemic Compound of Rna Duplexes., PDB code: 6zwu was solved by W.Rypniewski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.78 / 1.53
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	20.95, 26.27, 38.6, 106.19, 96.17, 92.47
R / Rfree (%)	19.8 / 25.2

The binding sites of Zinc atom in the Racemic Compound of Rna Duplexes. (pdb code 6zwu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Racemic Compound of Rna Duplexes., PDB code: 6zwu:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn101 b:24.4 occ:0.60 O K:HOH224 2.0 26.1 1.0 N7 K:0G82 2.1 14.9 1.0 O K:HOH222 2.2 22.6 1.0 O K:HOH238 2.2 23.3 1.0 O K:HOH209 2.2 23.1 1.0 O K:HOH204 2.2 21.2 1.0 C8 K:0G82 3.0 15.6 1.0 C5 K:0G82 3.2 14.8 1.0 O K:HOH236 3.2 50.9 1.0 O6 K:0G82 3.6 19.1 1.0 C6 K:0G82 3.8 16.6 1.0 O K:HOH217 3.9 25.4 1.0 O K:HOH229 3.9 38.7 1.0 OP1 K:0G82 4.0 19.0 1.0 N9 K:0G82 4.2 15.8 1.0 C4 K:0G82 4.3 15.7 1.0 O6 K:0G83 4.4 19.5 1.0 OP1 K:0G81 4.5 23.1 1.0 N7 K:0G81 4.5 17.7 1.0 N7 K:0G83 4.6 21.8 1.0 C8 K:0G81 4.8 15.8 1.0 O5' K:0G82 4.8 20.2 1.0 C5 K:0G81 4.9 16.3 1.0

Zinc binding site 2 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn102 b:45.8 occ:1.00 O K:HOH210 2.0 27.3 1.0 O K:HOH207 2.1 20.1 1.0 O K:HOH242 2.1 29.9 1.0 O K:HOH201 2.2 28.9 1.0 O K:HOH208 3.7 28.4 1.0 O M:HOH228 3.7 36.6 1.0 N7 K:0G85 3.8 24.4 1.0 O K:HOH212 4.0 34.0 1.0 O6 K:0G86 4.0 19.6 1.0 O6 K:0G85 4.3 25.4 1.0 N7 K:0G86 4.3 18.1 1.0 O2 M:C79 4.3 19.7 1.0 C5 K:0G85 4.6 21.0 1.0 C1' M:C79 4.7 22.6 1.0 C8 K:0G85 4.8 22.8 1.0 C6 K:0G85 4.8 21.4 1.0 O K:HOH231 4.8 37.5 1.0 C6 K:0G86 4.8 18.1 1.0 O2' M:C79 4.9 25.7 1.0 C5 K:0G86 5.0 16.5 1.0

Zinc binding site 3 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn101 b:36.5 occ:1.00 O L:HOH236 2.0 24.7 1.0 O L:HOH246 2.1 22.6 1.0 O L:HOH218 2.1 30.3 1.0 O L:HOH238 2.2 39.1 1.0 O L:HOH219 2.3 26.9 1.0 O K:HOH237 3.7 38.9 1.0 O L:HOH230 3.7 31.4 1.0 N7 L:0G96 4.0 20.3 1.0 O6 L:0G97 4.1 18.4 1.0 O L:HOH210 4.3 34.8 1.0 N7 L:0G97 4.3 17.1 1.0 C8 L:0G96 4.6 19.7 1.0 OP1 L:0G96 4.7 22.3 1.0 C6 L:0G97 4.9 17.4 1.0 O4 L:0U95 5.0 18.9 1.0 C5 L:0G96 5.0 20.1 1.0

Zinc binding site 4 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn102 b:45.1 occ:0.60 O L:HOH223 2.1 42.3 1.0 O L:HOH220 2.3 23.6 1.0 O L:HOH227 3.8 32.6 1.0 OP2 L:0U95 4.1 20.3 1.0 OP2 L:0C94 4.3 22.3 1.0 OP1 L:0U95 4.4 20.2 1.0 P L:0U95 4.8 18.8 1.0

Zinc binding site 5 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn101 b:30.6 occ:0.60 O M:HOH218 2.0 24.9 1.0 O M:HOH212 2.1 29.0 1.0 O M:HOH244 2.1 29.9 1.0 N7 M:G82 2.2 15.4 1.0 O M:HOH211 2.2 25.8 1.0 O M:HOH233 2.3 38.9 1.0 C8 M:G82 3.1 16.6 1.0 C5 M:G82 3.3 16.6 1.0 O6 M:G82 3.6 22.1 1.0 O M:HOH247 3.8 45.6 1.0 C6 M:G82 3.8 19.0 1.0 OP2 M:G82 3.9 19.4 1.0 O M:HOH236 3.9 27.1 1.0 O M:HOH219 4.0 25.1 1.0 O N:HOH230 4.1 32.3 1.0 O M:HOH246 4.2 39.1 1.0 N9 M:G82 4.3 15.5 1.0 N7 M:G81 4.3 20.8 1.0 C4 M:G82 4.4 16.9 1.0 O6 M:G83 4.6 20.3 1.0 C8 M:G81 4.6 19.2 1.0 OP2 M:G81 4.7 23.8 1.0 C5 M:G81 4.7 20.4 1.0 N7 M:G83 4.8 17.5 1.0 O5' M:G82 4.9 16.8 1.0

Zinc binding site 6 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn102 b:56.9 occ:1.00 O M:HOH205 2.1 25.1 1.0 O M:HOH213 2.2 31.7 1.0 O M:HOH201 2.2 33.0 1.0 O M:HOH240 2.3 62.9 1.0 O M:HOH208 2.6 39.8 1.0 N7 M:G85 3.1 21.5 1.0 C8 M:G85 4.0 19.1 1.0 O6 M:G85 4.1 22.9 1.0 C5 M:G85 4.1 19.0 1.0 O M:HOH203 4.2 46.8 1.0 O6 M:G86 4.2 17.3 1.0 N7 M:G86 4.3 16.2 1.0 OP2 M:G85 4.3 22.8 1.0 C6 M:G85 4.4 21.5 1.0 C5 M:C84 4.6 20.2 1.0 O M:HOH238 4.7 35.9 1.0 C4 M:C84 4.7 20.2 1.0 N4 M:C84 4.8 21.9 1.0 C6 M:G86 4.9 16.7 1.0 C5 M:G86 5.0 15.4 1.0

Zinc binding site 7 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:40.9 occ:1.00 O N:HOH247 2.0 26.4 1.0 O L:HOH240 2.1 26.2 1.0 O L:HOH244 2.2 28.8 1.0 O N:HOH215 2.2 33.7 1.0 O N:HOH220 2.3 33.7 1.0 O N:HOH235 2.4 40.8 1.0 N7 N:G96 4.1 19.2 1.0 O6 N:G97 4.2 20.7 1.0 N7 N:G97 4.3 18.3 1.0 O L:HOH242 4.3 44.2 1.0 O N:HOH210 4.4 34.3 1.0 O N:HOH202 4.7 44.9 1.0 O2 L:0C90 4.8 22.1 1.0 O4 N:U95 4.8 24.7 1.0 C5 N:U95 4.8 24.2 1.0 C4 N:U95 4.9 22.0 1.0 C8 N:G96 4.9 20.1 1.0 O6 N:G96 5.0 22.9 1.0 C6 N:G97 5.0 18.1 1.0

W.Rypniewski, A.Kiliszek, L.Blaszczyk, M.Bejger. Racemic Compound of Rna Duplexes. To Be Published.