Zinc in PDB 6zwm: Cryo-Em Structure of Human Mtor Complex 2, Overall Refinement

Enzymatic activity of Cryo-Em Structure of Human Mtor Complex 2, Overall Refinement

All present enzymatic activity of Cryo-Em Structure of Human Mtor Complex 2, Overall Refinement:
2.7.11.1;

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Human Mtor Complex 2, Overall Refinement (pdb code 6zwm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Human Mtor Complex 2, Overall Refinement, PDB code: 6zwm:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6zwm

Go back to Zinc Binding Sites List in 6zwm
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Human Mtor Complex 2, Overall Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Human Mtor Complex 2, Overall Refinement within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn4801

b:0.4
occ:1.00
NE2 E:HIS1515 2.2 0.5 1.0
SG E:CYS1651 2.2 0.5 1.0
SG E:CYS1523 2.3 0.7 1.0
SG E:CYS1520 2.3 0.3 1.0
CE1 E:HIS1515 2.9 0.5 1.0
CB E:CYS1651 3.3 0.5 1.0
CB E:CYS1520 3.3 0.3 1.0
CD2 E:HIS1515 3.4 0.5 1.0
CB E:CYS1523 3.4 0.7 1.0
CA E:CYS1651 3.8 0.5 1.0
N E:CYS1523 4.0 0.7 1.0
ND1 E:HIS1515 4.2 0.5 1.0
CA E:CYS1523 4.3 0.7 1.0
CG E:HIS1515 4.4 0.5 1.0
O E:THR1516 4.7 0.6 1.0
N E:CYS1651 4.7 0.5 1.0
CA E:CYS1520 4.7 0.3 1.0
O E:CYS1651 4.9 0.5 1.0
C E:CYS1651 4.9 0.5 1.0
CB E:TYR1522 5.0 0.2 1.0

Zinc binding site 2 out of 2 in 6zwm

Go back to Zinc Binding Sites List in 6zwm
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Human Mtor Complex 2, Overall Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Human Mtor Complex 2, Overall Refinement within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn4801

b:0.7
occ:1.00
NE2 F:HIS1515 2.2 0.9 1.0
SG F:CYS1520 2.3 0.0 1.0
SG F:CYS1651 2.3 0.5 1.0
SG F:CYS1523 2.3 0.6 1.0
CE1 F:HIS1515 3.0 0.9 1.0
CD2 F:HIS1515 3.3 0.9 1.0
CB F:CYS1520 3.4 0.0 1.0
CB F:CYS1523 3.4 0.6 1.0
CB F:CYS1651 3.6 0.5 1.0
N F:CYS1523 4.0 0.6 1.0
ND1 F:HIS1515 4.2 0.9 1.0
CA F:CYS1651 4.2 0.5 1.0
CA F:CYS1523 4.3 0.6 1.0
CG F:HIS1515 4.4 0.9 1.0
CA F:CYS1520 4.7 0.0 1.0
O F:THR1516 4.9 0.4 1.0

Reference:

A.Scaiola, F.Mangia, S.Imseng, D.Boehringer, K.Berneiser, M.Shimobayashi, E.Stuttfeld, M.N.Hall, N.Ban, T.Maier. The 3.2- Angstrom Resolution Structure of Human MTORC2. Sci Adv V. 6 2020.
ISSN: ESSN 2375-2548
PubMed: 33158864
DOI: 10.1126/SCIADV.ABC1251
Page generated: Wed Dec 16 13:31:53 2020

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