Zinc in PDB 6zvi: MBF1-Ribosome Complex

The binding sites of Zinc atom in the MBF1-Ribosome Complex (pdb code 6zvi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the MBF1-Ribosome Complex, PDB code: 6zvi:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the MBF1-Ribosome Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of MBF1-Ribosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn101 b:1.0 occ:1.00 SG L:CYS56 2.3 81.2 1.0 SG L:CYS37 2.3 84.3 1.0 CB L:CYS56 2.8 81.2 1.0 O L:SER58 3.2 89.8 1.0 SG L:CYS40 3.4 85.4 1.0 CB L:CYS37 3.4 84.3 1.0 SG L:CYS59 3.8 88.0 1.0 CA L:CYS56 4.3 81.2 1.0 N L:CYS40 4.3 85.4 1.0 C L:SER58 4.3 89.8 1.0 CB L:CYS40 4.6 85.4 1.0 N L:CYS56 4.7 81.2 1.0 CA L:CYS37 4.8 84.3 1.0 CA L:CYS40 5.0 85.4 1.0

Zinc binding site 2 out of 2 in the MBF1-Ribosome Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of MBF1-Ribosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ O:Zn101 b:53.7 occ:1.00 CB O:CYS39 1.0 30.2 1.0 CA O:CYS39 2.0 30.2 1.0 SG O:CYS39 2.3 30.2 1.0 N O:CYS39 2.6 30.2 1.0 C O:CYS39 2.7 30.2 1.0 O O:CYS39 3.2 30.2 1.0 SG O:CYS42 3.3 23.4 1.0 N O:ARG40 3.4 21.1 1.0 CB O:CYS42 3.5 23.4 1.0 N O:CYS42 3.5 23.4 1.0 N O:GLN41 3.9 22.9 1.0 C O:ILE38 3.9 22.8 1.0 SG O:CYS21 4.1 22.3 1.0 CA O:CYS42 4.1 23.4 1.0 OE1 O:GLN41 4.1 22.9 1.0 SG O:CYS24 4.3 23.5 1.0 CB O:CYS21 4.5 22.3 1.0 C O:GLN41 4.5 22.9 1.0 C O:ARG40 4.5 21.1 1.0 CA O:ARG40 4.5 21.1 1.0 O O:ILE38 4.6 22.8 1.0 CA O:GLN41 4.7 22.9 1.0 O O:GLY29 4.7 22.6 1.0 CG2 O:ILE38 4.8 22.8 1.0 O O:THR28 4.9 21.0 1.0 CB O:GLN41 4.9 22.9 1.0 N O:PHE43 4.9 20.9 1.0 CA O:ILE38 4.9 22.8 1.0

N.K.Sinha, A.Ordureau, K.Best, J.A.Saba, B.Zinshteyn, E.Sundaramoorthy, A.Fulzele, D.M.Garshott, T.Denk, M.Thoms, J.A.Paulo, W.Harper, E.J.Bennett, R.Beckmann, R.Green. EDF1 Coordinates Cellular Responses to Ribosome Collisions. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32744497
DOI: 10.7554/ELIFE.58828