Zinc in PDB 6zus: Crystal Structure of the Effector ECP11-1 From Fulvia Fulva
Protein crystallography data
The structure of Crystal Structure of the Effector ECP11-1 From Fulvia Fulva, PDB code: 6zus
was solved by
N.Lazar,
C.Mesarich,
Y.Petit-Houdenot,
N.Talbi,
I.Li De La Sierra-Gallay,
E.Zelie,
K.Blondeau,
J.Gracy,
B.Ollivier,
A.Van De Wouw,
M.H.Balesdent,
A.Idnurm,
H.Van Tilbeurgh,
I.Fudal,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.55 /
1.62
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
40.64,
53.64,
86.15,
90,
90,
90
|
R / Rfree (%)
|
18.4 /
19.7
|
Zinc Binding Sites:
The binding sites of Zinc atom in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva
(pdb code 6zus). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Crystal Structure of the Effector ECP11-1 From Fulvia Fulva, PDB code: 6zus:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 6zus
Go back to
Zinc Binding Sites List in 6zus
Zinc binding site 1 out
of 4 in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva
![](/pictures/ZN/pdb/zu/6zus-ZN-sphere_01.jpg) Mono view
![](/pictures/ZN/pdb/zu/6zus-ZN-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of the Effector ECP11-1 From Fulvia Fulva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn206
b:21.3
occ:0.80
|
ND1
|
A:HIS12
|
2.0
|
20.9
|
1.0
|
ZN
|
A:ZN207
|
2.2
|
29.6
|
0.5
|
O
|
A:HOH399
|
2.3
|
15.3
|
1.0
|
CE1
|
A:HIS12
|
3.0
|
20.8
|
1.0
|
CG
|
A:HIS12
|
3.1
|
19.4
|
1.0
|
CB
|
A:HIS12
|
3.5
|
19.0
|
1.0
|
OH
|
A:TYR124
|
3.9
|
21.5
|
1.0
|
NE2
|
A:HIS12
|
4.1
|
19.1
|
1.0
|
CE1
|
A:PHE14
|
4.1
|
21.3
|
1.0
|
CD2
|
A:HIS12
|
4.2
|
20.6
|
1.0
|
O
|
A:HOH315
|
4.2
|
50.6
|
1.0
|
CE2
|
A:TYR124
|
4.4
|
18.9
|
1.0
|
CZ
|
A:TYR124
|
4.5
|
18.6
|
1.0
|
CD1
|
A:PHE14
|
4.5
|
19.1
|
1.0
|
CH2
|
A:TRP10
|
4.7
|
20.3
|
1.0
|
CZ
|
A:PHE14
|
4.7
|
20.7
|
1.0
|
SG
|
A:CYS26
|
4.8
|
53.6
|
1.0
|
CA
|
A:HIS12
|
5.0
|
18.1
|
1.0
|
|
Zinc binding site 2 out
of 4 in 6zus
Go back to
Zinc Binding Sites List in 6zus
Zinc binding site 2 out
of 4 in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva
![](/pictures/ZN/pdb/zu/6zus-ZN-sphere_02.jpg) Mono view
![](/pictures/ZN/pdb/zu/6zus-ZN-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of the Effector ECP11-1 From Fulvia Fulva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn207
b:29.6
occ:0.50
|
ZN
|
A:ZN206
|
2.2
|
21.3
|
0.8
|
O
|
A:HOH315
|
3.0
|
50.6
|
1.0
|
CB
|
A:CYS73
|
3.5
|
24.0
|
1.0
|
CB
|
A:HIS12
|
3.6
|
19.0
|
1.0
|
ND1
|
A:HIS12
|
3.6
|
20.9
|
1.0
|
SG
|
A:CYS26
|
3.6
|
53.6
|
1.0
|
O
|
A:HOH399
|
3.7
|
15.3
|
1.0
|
CG
|
A:HIS12
|
4.1
|
19.4
|
1.0
|
CZ3
|
A:TRP10
|
4.1
|
18.8
|
1.0
|
CD2
|
A:LEU31
|
4.1
|
22.6
|
1.0
|
CH2
|
A:TRP10
|
4.2
|
20.3
|
1.0
|
SG
|
A:CYS73
|
4.4
|
27.8
|
1.0
|
CE1
|
A:PHE14
|
4.5
|
21.3
|
1.0
|
CB
|
A:CYS26
|
4.5
|
37.9
|
1.0
|
O
|
A:CYS73
|
4.8
|
18.8
|
1.0
|
CA
|
A:CYS73
|
4.8
|
20.0
|
1.0
|
CE1
|
A:HIS12
|
4.8
|
20.8
|
1.0
|
CA
|
A:HIS12
|
4.9
|
18.1
|
1.0
|
CG
|
A:LEU31
|
5.0
|
22.5
|
1.0
|
O
|
A:HOH313
|
5.0
|
43.0
|
1.0
|
|
Zinc binding site 3 out
of 4 in 6zus
Go back to
Zinc Binding Sites List in 6zus
Zinc binding site 3 out
of 4 in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva
![](/pictures/ZN/pdb/zu/6zus-ZN-sphere_03.jpg) Mono view
![](/pictures/ZN/pdb/zu/6zus-ZN-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of the Effector ECP11-1 From Fulvia Fulva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn208
b:25.5
occ:0.50
|
ZN
|
A:ZN209
|
2.3
|
21.9
|
0.8
|
OXT
|
A:GLN140
|
3.2
|
24.9
|
1.0
|
N
|
A:GLY138
|
3.3
|
20.3
|
1.0
|
N
|
A:MET0
|
3.3
|
27.9
|
1.0
|
ND1
|
A:HIS136
|
3.5
|
33.9
|
1.0
|
CA
|
A:HIS-1
|
3.5
|
30.8
|
1.0
|
ND1
|
A:HIS-1
|
3.7
|
32.3
|
1.0
|
CB
|
A:HIS136
|
3.7
|
27.0
|
1.0
|
CB
|
A:HIS-1
|
3.7
|
28.4
|
1.0
|
O
|
A:MET0
|
3.8
|
26.2
|
1.0
|
CA
|
A:GLY138
|
3.8
|
19.7
|
1.0
|
N
|
A:CYS137
|
3.8
|
24.0
|
1.0
|
C
|
A:HIS-1
|
3.9
|
32.1
|
1.0
|
CG
|
A:HIS136
|
4.0
|
32.0
|
1.0
|
CG
|
A:HIS-1
|
4.1
|
28.8
|
1.0
|
CA
|
A:HIS136
|
4.2
|
25.8
|
1.0
|
CA
|
A:MET0
|
4.3
|
30.8
|
0.5
|
CA
|
A:MET0
|
4.4
|
30.6
|
0.5
|
C
|
A:CYS137
|
4.4
|
22.2
|
1.0
|
C
|
A:MET0
|
4.4
|
28.8
|
1.0
|
C
|
A:HIS136
|
4.4
|
24.4
|
1.0
|
C
|
A:GLN140
|
4.5
|
30.9
|
1.0
|
O
|
A:GLY138
|
4.5
|
23.2
|
1.0
|
C
|
A:GLY138
|
4.5
|
20.9
|
1.0
|
CA
|
A:CYS137
|
4.6
|
24.2
|
1.0
|
CB
|
A:MET0
|
4.7
|
32.4
|
0.5
|
CE1
|
A:HIS136
|
4.7
|
35.2
|
1.0
|
CE1
|
A:HIS-1
|
4.8
|
34.3
|
1.0
|
CB
|
A:MET0
|
4.8
|
32.5
|
0.5
|
N
|
A:HIS-1
|
4.9
|
31.4
|
1.0
|
O
|
A:GLY-2
|
4.9
|
24.0
|
1.0
|
CB
|
A:CYS137
|
4.9
|
27.2
|
1.0
|
|
Zinc binding site 4 out
of 4 in 6zus
Go back to
Zinc Binding Sites List in 6zus
Zinc binding site 4 out
of 4 in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva
![](/pictures/ZN/pdb/zu/6zus-ZN-sphere_04.jpg) Mono view
![](/pictures/ZN/pdb/zu/6zus-ZN-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of the Effector ECP11-1 From Fulvia Fulva within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn209
b:21.9
occ:0.80
|
OXT
|
A:GLN140
|
1.6
|
24.9
|
1.0
|
ND1
|
A:HIS136
|
2.0
|
33.9
|
1.0
|
ND1
|
A:HIS-1
|
2.2
|
32.3
|
1.0
|
ZN
|
A:ZN208
|
2.3
|
25.5
|
0.5
|
C
|
A:GLN140
|
2.7
|
30.9
|
1.0
|
CE1
|
A:HIS136
|
3.0
|
35.2
|
1.0
|
O
|
A:GLN140
|
3.0
|
29.4
|
1.0
|
CG
|
A:HIS136
|
3.1
|
32.0
|
1.0
|
CE1
|
A:HIS-1
|
3.1
|
34.3
|
1.0
|
CG
|
A:HIS-1
|
3.1
|
28.8
|
1.0
|
CB
|
A:HIS136
|
3.4
|
27.0
|
1.0
|
CB
|
A:HIS-1
|
3.4
|
28.4
|
1.0
|
CA
|
A:HIS-1
|
4.1
|
30.8
|
1.0
|
NE2
|
A:HIS136
|
4.1
|
31.1
|
1.0
|
CA
|
A:GLN140
|
4.2
|
30.6
|
1.0
|
CD2
|
A:HIS136
|
4.2
|
34.3
|
1.0
|
NE2
|
A:HIS-1
|
4.3
|
29.2
|
1.0
|
CD2
|
A:HIS-1
|
4.3
|
31.3
|
1.0
|
N
|
A:GLN140
|
4.6
|
28.8
|
1.0
|
CA
|
A:HIS136
|
4.6
|
25.8
|
1.0
|
O
|
A:GLY138
|
4.6
|
23.2
|
1.0
|
N
|
A:GLY138
|
4.7
|
20.3
|
1.0
|
CA
|
A:GLY138
|
4.8
|
19.7
|
1.0
|
C
|
A:GLY138
|
4.9
|
20.9
|
1.0
|
N
|
A:MET0
|
4.9
|
27.9
|
1.0
|
CD2
|
A:LEU1
|
4.9
|
35.8
|
1.0
|
C
|
A:HIS-1
|
4.9
|
32.1
|
1.0
|
CB
|
A:GLN140
|
5.0
|
35.8
|
1.0
|
|
Reference:
N.Lazar,
C.Mesarich,
Y.Petit-Houdenot,
N.Talbi,
I.Li De La Sierra-Gallay,
E.Zelie,
K.Blondeau,
J.Gracy,
B.Ollivier,
A.Van De Wouw,
M.H.Balesdent,
A.Idnurm,
H.Van Tilbeurgh,
I.Fudal.
AVRLM3, AVRLM4-7 and AVRLM5-9, Three Avirulence Effectors of Leptosphaeria Maculans Displaying Suppressive Interactions, Share A Structural Fold and Are Part of A Large Effector Family To Be Published.
Page generated: Sat Aug 21 17:58:31 2021
|