Zinc in PDB 6zuq: Crystal Structure of the Effector ECP11-1 From Fulvia Fulva

Protein crystallography data

The structure of Crystal Structure of the Effector ECP11-1 From Fulvia Fulva, PDB code: 6zuq was solved by N.Lazar, C.Mesarich, Y.Petit-Houdenot, N.Talbi, I.Li De La Sierra-Gallay, E.Zelie, K.Blondeau, J.Gracy, B.Ollivier, A.Van De Wouw, M.H.Balesdent, A.Idnurm, H.Van Tilbeurgh, I.Fudal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.13 / 1.94
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.76, 53.63, 86.27, 90, 90, 90
R / Rfree (%) 20 / 21.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva (pdb code 6zuq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva, PDB code: 6zuq:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6zuq

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Zinc binding site 1 out of 4 in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Effector ECP11-1 From Fulvia Fulva within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:41.8
occ:1.00
ND1 A:HIS12 2.0 33.0 1.0
ZN A:ZN205 2.3 50.0 1.0
O A:HOH332 2.3 26.9 1.0
CE1 A:HIS12 2.8 30.9 1.0
CG A:HIS12 3.0 30.8 1.0
CB A:HIS12 3.5 30.9 1.0
OH A:TYR124 3.9 34.5 1.0
NE2 A:HIS12 4.0 35.3 1.0
CE1 A:PHE14 4.0 34.0 1.0
CD2 A:HIS12 4.1 36.9 1.0
CE2 A:TYR124 4.4 29.8 1.0
CD1 A:PHE14 4.5 33.4 1.0
CZ A:TYR124 4.5 31.1 1.0
CZ A:PHE14 4.6 35.5 1.0
SG A:CYS26 4.7 46.5 0.6
CH2 A:TRP10 4.8 33.3 1.0
CA A:HIS12 5.0 29.4 1.0

Zinc binding site 2 out of 4 in 6zuq

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Zinc binding site 2 out of 4 in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Effector ECP11-1 From Fulvia Fulva within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn203

b:40.9
occ:1.00
OXT A:GLN140 2.0 40.4 1.0
ND1 A:HIS136 2.1 45.1 1.0
ND1 A:HIS-1 2.2 41.0 1.0
ZN A:ZN204 2.4 48.3 1.0
C A:GLN140 2.8 46.1 1.0
O A:GLN140 3.0 48.4 1.0
CG A:HIS136 3.1 45.4 1.0
CE1 A:HIS136 3.1 46.5 1.0
CE1 A:HIS-1 3.1 44.3 1.0
CG A:HIS-1 3.2 41.6 1.0
CB A:HIS136 3.3 36.3 1.0
CB A:HIS-1 3.6 37.2 1.0
NE2 A:HIS136 4.2 46.4 1.0
CD2 A:HIS136 4.2 43.4 1.0
CA A:HIS-1 4.2 41.2 1.0
NE2 A:HIS-1 4.3 50.6 1.0
CA A:GLN140 4.3 47.5 1.0
CD2 A:HIS-1 4.4 44.4 1.0
CA A:HIS136 4.5 39.0 1.0
O A:GLY138 4.6 37.5 1.0
N A:GLN140 4.6 41.1 1.0
N A:GLY138 4.8 31.9 1.0
N A:MET0 4.9 44.0 1.0
C A:GLY138 4.9 37.8 1.0
CA A:GLY138 4.9 34.0 1.0
CD2 A:LEU1 5.0 43.5 1.0

Zinc binding site 3 out of 4 in 6zuq

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Zinc binding site 3 out of 4 in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Effector ECP11-1 From Fulvia Fulva within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn204

b:48.3
occ:1.00
ZN A:ZN203 2.4 40.9 1.0
N A:MET0 3.3 44.0 1.0
N A:GLY138 3.3 31.9 1.0
OXT A:GLN140 3.5 40.4 1.0
CA A:HIS-1 3.6 41.2 1.0
ND1 A:HIS-1 3.6 41.0 1.0
O A:MET0 3.7 40.1 1.0
ND1 A:HIS136 3.7 45.1 1.0
CB A:HIS136 3.7 36.3 1.0
N A:CYS137 3.8 34.2 1.0
CB A:HIS-1 3.9 37.2 1.0
CA A:GLY138 3.9 34.0 1.0
C A:HIS-1 3.9 42.7 1.0
CG A:HIS136 4.1 45.4 1.0
CG A:HIS-1 4.2 41.6 1.0
CA A:HIS136 4.2 39.0 1.0
C A:MET0 4.3 38.8 1.0
CA A:MET0 4.3 40.7 1.0
C A:HIS136 4.3 36.7 1.0
C A:CYS137 4.4 34.1 1.0
CA A:CYS137 4.5 36.9 1.0
O A:GLY138 4.5 37.5 1.0
C A:GLY138 4.6 37.8 1.0
CB A:MET0 4.6 43.4 1.0
C A:GLN140 4.7 46.1 1.0
CE1 A:HIS-1 4.7 44.3 1.0
CE1 A:HIS136 4.8 46.5 1.0
CB A:CYS137 4.8 37.1 1.0
O A:GLY-2 4.9 39.9 1.0
N A:HIS-1 4.9 47.0 1.0

Zinc binding site 4 out of 4 in 6zuq

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Zinc binding site 4 out of 4 in the Crystal Structure of the Effector ECP11-1 From Fulvia Fulva


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Effector ECP11-1 From Fulvia Fulva within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn205

b:50.0
occ:1.00
ZN A:ZN202 2.3 41.8 1.0
CB A:CYS73 3.5 35.5 1.0
SG A:CYS26 3.5 46.5 0.6
ND1 A:HIS12 3.6 33.0 1.0
CB A:HIS12 3.6 30.9 1.0
O A:HOH332 3.8 26.9 1.0
CG A:HIS12 4.1 30.8 1.0
CD2 A:LEU31 4.1 34.5 1.0
CZ3 A:TRP10 4.2 31.9 1.0
SG A:CYS73 4.2 41.9 0.9
CH2 A:TRP10 4.3 33.3 1.0
CE1 A:PHE14 4.4 34.0 1.0
CB A:CYS26 4.4 42.8 1.0
CE1 A:HIS12 4.8 30.9 1.0
CA A:CYS73 4.8 31.0 1.0
O A:CYS73 4.9 33.4 1.0
CZ A:PHE14 4.9 35.5 1.0
CA A:HIS12 5.0 29.4 1.0
CG A:LEU31 5.0 31.0 1.0

Reference:

N.Lazar, C.Mesarich, Y.Petit-Houdenot, N.Talbi, I.Li De La Sierra-Gallay, E.Zelie, K.Blondeau, J.Gracy, B.Ollivier, A.Van De Wouw, M.H.Balesdent, A.Idnurm, H.Van Tilbeurgh, I.Fudal. AVRLM3, AVRLM4-7 and AVRLM5-9, Three Avirulence Effectors of Leptosphaeria Maculans Displaying Suppressive Interactions, Share A Structural Fold and Are Part of A Large Effector Family To Be Published.
Page generated: Sat Aug 21 17:58:31 2021

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