Zinc in PDB 6zu9: Structure of A Yeast ABCE1-Bound 48S Initiation Complex

The structure of Structure of A Yeast ABCE1-Bound 48S Initiation Complex also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Iron	(Fe)	8 atoms

The binding sites of Zinc atom in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex (pdb code 6zu9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex, PDB code: 6zu9:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:0.9 occ:1.00 CB N:CYS42 2.6 0.1 1.0 CB N:CYS24 3.7 0.2 1.0 CB N:CYS21 3.7 0.6 1.0 CB N:CYS39 3.8 0.9 1.0 N N:CYS39 4.0 0.9 1.0 CA N:CYS42 4.0 0.1 1.0 N N:CYS24 4.1 0.2 1.0 N N:CYS42 4.3 0.1 1.0 O N:CYS39 4.3 0.9 1.0 CA N:CYS39 4.4 0.9 1.0 CB N:VAL23 4.4 0.0 1.0 CA N:CYS24 4.5 0.2 1.0 C N:CYS39 4.7 0.9 1.0 O2' 2:G1433 4.8 0.2 1.0 C N:CYS42 4.8 0.1 1.0 C N:VAL23 4.9 0.0 1.0 N2 2:G1433 5.0 0.2 1.0

Zinc binding site 2 out of 3 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ O:Zn201 b:0.5 occ:1.00 N O:CYS126 2.6 0.7 1.0 CB O:ASN123 2.7 0.1 1.0 CB O:CYS126 2.9 0.7 1.0 CA O:CYS126 3.2 0.7 1.0 C O:THR125 3.4 0.9 1.0 CB O:THR125 3.6 0.9 1.0 CB O:LYS143 3.6 0.9 1.0 N O:THR125 3.8 0.9 1.0 CA O:THR125 3.8 0.9 1.0 CA O:ASN123 3.8 0.1 1.0 O O:ASN123 3.9 0.1 1.0 C O:ASN123 4.0 0.1 1.0 N O:CYS144 4.2 0.1 1.0 N O:ASN123 4.2 0.1 1.0 O O:THR125 4.4 0.9 1.0 C O:CYS126 4.5 0.7 1.0 C O:LYS143 4.6 0.9 1.0 CB O:CYS121 4.6 0.3 1.0 CA O:LYS143 4.7 0.9 1.0 C O:PRO124 4.8 0.0 1.0 CB O:CYS144 4.8 0.1 1.0 O O:CYS126 4.8 0.7 1.0 N O:PRO124 4.8 0.0 1.0

Zinc binding site 3 out of 3 in the Structure of A Yeast ABCE1-Bound 48S Initiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of A Yeast ABCE1-Bound 48S Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ m:Zn501 b:0.7 occ:1.00 O m:LYS126 2.6 0.5 1.0 CB m:CYS99 3.3 0.2 1.0 CB m:CYS121 3.3 0.3 1.0 C m:LYS126 3.6 0.5 1.0 CB m:THR128 3.9 0.1 1.0 N m:CYS121 4.0 1.0 1.0 N m:THR128 4.0 0.8 1.0 CA m:CYS121 4.2 0.5 1.0 CA m:LYS126 4.4 0.6 1.0 N m:LYS126 4.4 0.1 1.0 C m:ARG127 4.4 0.1 1.0 N m:ARG127 4.4 0.1 1.0 CA m:CYS99 4.6 0.1 1.0 CA m:THR128 4.6 0.9 1.0 CA m:ARG127 4.6 0.9 1.0 CB m:LYS126 4.6 1.0 1.0 CB m:SER101 4.8 0.9 1.0 N m:GLY100 4.9 0.7 1.0 C m:ASP120 5.0 0.2 1.0

H.Kratzat, T.Mackens-Kiani, A.Ameismeier, J.Cheng, E.Dacheux, A.Namane, O.Berninghausen, M.Fromont-Racine, T.Becker, R.Beckmann. Structural Inventory of Native Ribosomal ABCE1-43S Pre-Initiation Complexes To Be Published.