Zinc in PDB 6zsv: Structure of Crocagin Biosynthetic Protein Cgnb

The structure of Structure of Crocagin Biosynthetic Protein Cgnb, PDB code: 6zsv was solved by J.Koehnke, S.Adam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.17 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.448, 67.5, 86.152, 90, 95.99, 90
R / Rfree (%)	28.3 / 30.5

The binding sites of Zinc atom in the Structure of Crocagin Biosynthetic Protein Cgnb (pdb code 6zsv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of Crocagin Biosynthetic Protein Cgnb, PDB code: 6zsv:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Structure of Crocagin Biosynthetic Protein Cgnb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Crocagin Biosynthetic Protein Cgnb within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:29.9 occ:0.42 OE2 A:GLU274 1.8 97.1 1.0 OE2 A:GLU252 2.1 90.2 1.0 NE2 A:HIS280 2.1 71.3 1.0 OE1 A:GLU161 2.2 43.3 1.0 CD A:GLU252 2.8 75.1 1.0 HB3 A:ALA254 2.8 65.5 1.0 CD A:GLU274 2.9 70.2 1.0 CD A:GLU161 2.9 43.1 1.0 HG2 A:GLU274 3.0 87.6 1.0 CD2 A:HIS280 3.1 99.8 1.0 CE1 A:HIS280 3.1 64.8 1.0 OE2 A:GLU161 3.1 41.8 1.0 OE1 A:GLU252 3.2 81.1 1.0 HD2 A:HIS280 3.2 120.0 1.0 HE1 A:HIS280 3.3 78.0 1.0 HB2 A:ALA254 3.3 65.5 1.0 HB1 A:ALA254 3.3 65.5 1.0 CB A:ALA254 3.3 54.4 1.0 CG A:GLU274 3.3 72.8 1.0 HG3 A:GLU274 3.5 87.6 1.0 HB2 A:SER163 3.8 50.0 1.0 HG A:SER163 3.8 50.1 1.0 HG2 A:GLU252 3.9 75.9 1.0 CG A:GLU252 4.0 63.0 1.0 OE1 A:GLU274 4.0 77.3 1.0 ZN A:ZN402 4.1 43.0 0.1 OG A:SER163 4.1 41.6 1.0 ND1 A:HIS280 4.2 101.9 1.0 CG A:HIS280 4.2 37.5 1.0 CG A:GLU161 4.2 44.8 1.0 HG3 A:GLU252 4.3 75.9 1.0 HB2 A:GLU161 4.4 54.3 1.0 HG3 A:GLU161 4.4 54.0 1.0 CB A:SER163 4.5 41.5 1.0 CB A:GLU161 4.8 45.1 1.0 CB A:GLU274 4.8 51.4 1.0 OD2 A:ASP293 4.8 63.7 1.0 CA A:ALA254 4.8 52.9 1.0 OD1 A:ASP293 4.8 61.9 1.0 HB3 A:GLU161 4.8 54.3 1.0 HG2 A:GLU161 4.9 54.0 1.0 HB3 A:GLU274 5.0 62.0 1.0 HD1 A:HIS280 5.0 122.6 1.0 CG A:ASP293 5.0 59.5 1.0

Zinc binding site 2 out of 4 in the Structure of Crocagin Biosynthetic Protein Cgnb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Crocagin Biosynthetic Protein Cgnb within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:43.0 occ:0.14 OD1 A:ASP293 1.9 61.9 1.0 OE1 A:GLU252 1.9 81.1 1.0 NE2 A:HIS291 2.1 74.9 1.0 OD2 A:ASP293 2.1 63.7 1.0 CG A:ASP293 2.3 59.5 1.0 CD2 A:HIS291 2.7 79.5 1.0 HD2 A:HIS291 2.7 95.7 1.0 CD A:GLU252 3.1 75.1 1.0 CE1 A:HIS291 3.2 74.2 1.0 HE1 A:HIS291 3.5 89.3 1.0 HD2 A:HIS280 3.6 120.0 1.0 HB3 A:GLU252 3.7 67.3 1.0 CB A:ASP293 3.8 57.3 1.0 OE2 A:GLU252 3.8 90.2 1.0 OE2 A:GLU274 3.8 97.1 1.0 HA3 A:GLY282 3.8 79.0 1.0 CG A:HIS291 3.9 67.8 1.0 ND1 A:HIS291 4.1 79.2 1.0 ZN A:ZN401 4.1 29.9 0.4 CD A:GLU274 4.1 70.2 1.0 HB3 A:ASP293 4.2 69.0 1.0 HA2 A:GLY282 4.2 79.0 1.0 CG A:GLU252 4.2 63.0 1.0 CB A:GLU252 4.2 55.9 1.0 HB2 A:GLU252 4.2 67.3 1.0 HB2 A:ASP293 4.2 69.0 1.0 HA A:ASP293 4.3 71.4 1.0 HG3 A:GLU274 4.3 87.6 1.0 O A:MET292 4.4 58.2 1.0 CD2 A:HIS280 4.4 99.8 1.0 OE1 A:GLU274 4.5 77.3 1.0 CA A:GLY282 4.5 65.6 1.0 CA A:ASP293 4.6 59.3 1.0 HG2 A:GLU252 4.6 75.9 1.0 CG A:GLU274 4.8 72.8 1.0 NE2 A:HIS280 4.8 71.3 1.0 HD1 A:HIS291 4.9 95.3 1.0 C A:MET292 4.9 55.7 1.0 N A:ASP293 5.0 77.4 1.0 HG3 A:GLU252 5.0 75.9 1.0

Zinc binding site 3 out of 4 in the Structure of Crocagin Biosynthetic Protein Cgnb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Crocagin Biosynthetic Protein Cgnb within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:28.8 occ:0.38 OE2 B:GLU274 1.8 64.2 1.0 OE2 B:GLU252 2.0 61.1 1.0 OE1 B:GLU161 2.0 49.8 1.0 NE2 B:HIS280 2.0 66.2 1.0 CD B:GLU274 2.8 61.0 1.0 CD B:GLU161 2.8 79.0 1.0 CE1 B:HIS280 2.8 65.8 1.0 HG2 B:GLU274 2.8 69.4 1.0 CD B:GLU252 2.9 78.0 1.0 HE1 B:HIS280 2.9 79.3 1.0 OE2 B:GLU161 3.0 83.1 1.0 CG B:GLU274 3.1 57.6 1.0 HG3 B:GLU274 3.1 69.4 1.0 OE1 B:GLU252 3.2 62.5 1.0 CD2 B:HIS280 3.2 107.2 1.0 HB3 B:ALA254 3.2 48.9 1.0 HD2 B:HIS280 3.5 128.8 1.0 HB1 B:ALA254 3.6 48.9 1.0 HB2 B:ALA254 3.6 48.9 1.0 CB B:ALA254 3.6 40.5 1.0 HB2 B:SER163 3.8 78.9 1.0 OE1 B:GLU274 3.9 69.1 1.0 ZN B:ZN402 4.0 29.4 0.1 ND1 B:HIS280 4.0 104.7 1.0 HG B:SER163 4.1 77.0 1.0 CG B:GLU252 4.1 50.6 1.0 CG B:GLU161 4.2 36.5 1.0 HG2 B:GLU252 4.2 61.0 1.0 CG B:HIS280 4.2 36.8 1.0 OG B:SER163 4.4 64.0 1.0 HG3 B:GLU161 4.4 44.1 1.0 HG3 B:GLU252 4.4 61.0 1.0 OD2 B:ASP293 4.6 47.8 1.0 CB B:SER163 4.6 65.5 1.0 HB2 B:GLU161 4.6 55.6 1.0 CB B:GLU274 4.6 55.4 1.0 HD1 B:HIS280 4.8 125.9 1.0 HG2 B:GLU161 4.8 44.1 1.0 CG B:ASP293 4.9 43.1 1.0 CB B:GLU161 4.9 46.1 1.0 HB3 B:GLU274 4.9 66.7 1.0 OD1 B:ASP293 4.9 53.4 1.0 HB3 B:GLU161 4.9 55.6 1.0

Zinc binding site 4 out of 4 in the Structure of Crocagin Biosynthetic Protein Cgnb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Crocagin Biosynthetic Protein Cgnb within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn402 b:29.4 occ:0.11 HE2 B:HIS291 1.7 56.8 1.0 OE1 B:GLU252 1.8 62.5 1.0 OD1 B:ASP293 2.1 53.4 1.0 NE2 B:HIS291 2.2 47.1 1.0 OD2 B:ASP293 2.5 47.8 1.0 CG B:ASP293 2.6 43.1 1.0 CD2 B:HIS291 2.8 51.4 1.0 HD2 B:HIS291 2.9 61.9 1.0 CD B:GLU252 3.0 78.0 1.0 CE1 B:HIS291 3.3 46.7 1.0 OE2 B:GLU274 3.6 64.2 1.0 HE1 B:HIS291 3.6 56.3 1.0 HB3 B:GLU252 3.7 61.5 1.0 OE2 B:GLU252 3.7 61.1 1.0 HD2 B:HIS280 3.9 128.8 1.0 CG B:HIS291 4.0 36.2 1.0 ZN B:ZN401 4.0 28.8 0.4 HA3 B:GLY282 4.0 57.8 1.0 CD B:GLU274 4.0 61.0 1.0 HB2 B:GLU252 4.1 61.5 1.0 CB B:ASP293 4.1 37.3 1.0 ND1 B:HIS291 4.1 53.3 1.0 CG B:GLU252 4.2 50.6 1.0 CB B:GLU252 4.2 51.0 1.0 OE1 B:GLU274 4.4 69.1 1.0 HB3 B:ASP293 4.4 45.0 1.0 HG3 B:GLU274 4.4 69.4 1.0 O B:HOH525 4.5 55.3 1.0 HA2 B:GLY282 4.5 57.8 1.0 CD2 B:HIS280 4.5 107.2 1.0 HA B:ASP293 4.6 38.3 1.0 NE2 B:HIS280 4.6 66.2 1.0 HG2 B:GLU252 4.6 61.0 1.0 HB2 B:ASP293 4.6 45.0 1.0 CA B:GLY282 4.7 48.0 1.0 HG3 B:GLU252 4.8 61.0 1.0 CA B:ASP293 4.8 31.7 1.0 O B:MET292 4.8 37.7 1.0 CG B:GLU274 4.9 57.6 1.0

J.Koehnke, S.Adam. Structure of Crocagin Biosynthetic Protein Cgnb To Be Published.