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Zinc in PDB 6zsk: Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex

Protein crystallography data

The structure of Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex, PDB code: 6zsk was solved by H.R.Adams, M.A.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.22 / 1.60
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 105.49, 105.49, 105.49, 90, 90, 90
R / Rfree (%) 18.1 / 19.8

Other elements in 6zsk:

The structure of Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex (pdb code 6zsk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex, PDB code: 6zsk:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 6zsk

Go back to Zinc Binding Sites List in 6zsk
Zinc binding site 1 out of 3 in the Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:24.1
occ:0.33
NE2 A:HIS71 2.1 24.9 1.0
O A:HOH344 2.3 37.7 1.0
CE1 A:HIS71 3.0 29.5 1.0
CD2 A:HIS71 3.1 28.9 1.0
ND1 A:HIS71 4.2 31.6 1.0
CG A:HIS71 4.2 26.9 1.0
OD1 A:ASN70 4.3 30.7 1.0

Zinc binding site 2 out of 3 in 6zsk

Go back to Zinc Binding Sites List in 6zsk
Zinc binding site 2 out of 3 in the Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn203

b:53.9
occ:0.33
OE1 A:GLU29 1.6 38.6 1.0
O A:HOH313 2.5 28.2 0.3
CD A:GLU29 2.7 40.5 1.0
OE2 A:GLU29 3.1 46.1 1.0
CG A:GLU29 4.0 43.5 1.0
N A:GLY25 4.7 29.6 1.0

Zinc binding site 3 out of 3 in 6zsk

Go back to Zinc Binding Sites List in 6zsk
Zinc binding site 3 out of 3 in the Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cytochrome C Prime Beta From Methylococcus Capsulatus (Bath): Co Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:33.6
occ:0.70
OE2 B:GLU68 1.9 42.5 1.0
ND1 B:HIS71 2.2 36.5 1.0
CD B:GLU68 2.9 35.3 1.0
CE1 B:HIS71 2.9 44.1 1.0
OE1 B:GLU68 3.3 34.1 1.0
CG B:HIS71 3.4 33.7 1.0
OE1 A:GLN23 3.7 40.8 1.0
CB B:HIS71 3.9 32.6 1.0
O A:HOH305 3.9 42.5 1.0
CA B:HIS71 4.0 30.1 1.0
NE2 B:HIS71 4.1 39.2 1.0
CG B:GLU68 4.1 33.5 1.0
CD2 B:HIS71 4.4 41.3 1.0
CD A:GLN23 4.6 35.1 1.0
N B:HIS71 4.8 29.4 1.0

Reference:

H.R.Adams, R.W.Strange, D.A.Svistunenko, C.R.Andrew, M.A.Hough. To Be Published To Be Published.
Page generated: Sat Aug 21 17:58:29 2021

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