Zinc in PDB 6zr1: Racemic Compound of Rna Duplexes.

The structure of Racemic Compound of Rna Duplexes., PDB code: 6zr1 was solved by W.Rypniewski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.95 / 1.53
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	21.13, 26.76, 38.82, 106.09, 97.19, 91.42
R / Rfree (%)	20.3 / 25.3

The binding sites of Zinc atom in the Racemic Compound of Rna Duplexes. (pdb code 6zr1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Racemic Compound of Rna Duplexes., PDB code: 6zr1:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn101 b:23.0 occ:0.70 O K:HOH220 2.0 19.3 1.0 O K:HOH208 2.1 19.9 1.0 O K:HOH223 2.1 27.7 1.0 N7 K:G82 2.1 15.8 1.0 O K:HOH205 2.2 20.8 1.0 O K:HOH235 2.2 28.6 1.0 C8 K:G82 3.0 14.6 1.0 C5 K:G82 3.2 14.2 1.0 O6 K:G82 3.6 16.3 1.0 O K:HOH233 3.7 41.9 1.0 C6 K:G82 3.8 14.9 1.0 OP2 K:G82 3.9 16.2 1.0 O K:HOH212 4.1 19.3 1.0 O L:HOH221 4.2 31.5 1.0 N9 K:G82 4.2 14.6 1.0 C4 K:G82 4.3 14.2 1.0 O K:HOH215 4.5 28.0 1.0 O6 K:G83 4.5 15.6 1.0 N7 K:G81 4.6 17.4 1.0 OP2 K:G81 4.6 21.9 1.0 N7 K:G83 4.7 17.8 1.0 C8 K:G81 4.9 15.8 1.0 O5' K:G82 4.9 15.3 1.0 C5 K:G81 4.9 16.0 1.0

Zinc binding site 2 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn102 b:31.1 occ:0.80 O K:HOH203 1.7 31.7 1.0 O K:HOH222 2.1 22.4 1.0 O K:HOH237 2.2 31.3 1.0 O K:HOH201 2.2 32.2 1.0 O K:HOH213 2.9 31.4 1.0 N7 K:G85 3.6 23.9 1.0 O K:HOH209 4.0 33.2 1.0 O M:HOH214 4.0 27.4 1.0 O6 K:G85 4.1 20.2 1.0 O6 K:G86 4.2 16.6 1.0 O K:HOH225 4.2 43.3 1.0 N7 K:G86 4.4 15.2 1.0 C5 K:G85 4.5 19.7 1.0 C8 K:G85 4.6 20.5 1.0 C6 K:G85 4.6 20.4 1.0 O2 M:0C79 4.7 19.4 1.0 OP2 K:G85 4.7 30.1 1.0 N4 K:C84 4.9 19.5 1.0 C1' M:0C79 5.0 20.1 1.0 C6 K:G86 5.0 16.2 1.0 C5 K:C84 5.0 18.2 1.0

Zinc binding site 3 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn101 b:27.7 occ:0.80 O L:HOH236 1.7 25.0 1.0 O L:HOH241 1.7 18.2 1.0 O L:HOH232 1.9 24.6 1.0 O L:HOH246 1.9 22.8 1.0 O L:HOH212 2.0 25.0 1.0 O L:HOH216 4.0 39.1 1.0 O6 L:G97 4.1 18.1 1.0 N7 L:G96 4.1 19.6 1.0 O L:HOH227 4.2 31.9 1.0 N7 L:G97 4.4 14.3 1.0 C8 L:G96 4.8 20.3 1.0 C6 L:G97 4.9 15.2 1.0 O4 L:U95 4.9 15.6 1.0

Zinc binding site 4 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn102 b:43.5 occ:0.80 O L:HOH220 2.1 22.6 1.0 O L:HOH230 2.3 31.8 1.0 OP1 L:U95 4.1 18.4 1.0 OP2 L:U95 4.3 15.5 1.0 OP1 L:C94 4.4 18.2 1.0 P L:U95 4.7 15.7 1.0

Zinc binding site 5 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn101 b:22.6 occ:0.60 O M:HOH217 2.0 22.7 1.0 O M:HOH218 2.0 28.8 1.0 O M:HOH221 2.1 25.3 1.0 O M:HOH238 2.1 26.9 1.0 N7 M:0G82 2.2 14.0 1.0 O M:HOH206 2.3 26.8 1.0 C8 M:0G82 3.1 13.6 1.0 C5 M:0G82 3.3 13.6 1.0 O6 M:0G82 3.6 17.6 1.0 C6 M:0G82 3.8 16.1 1.0 OP1 M:0G82 3.9 15.0 1.0 O M:HOH234 4.0 29.4 1.0 O M:HOH216 4.1 19.5 1.0 O N:HOH223 4.1 26.0 1.0 O M:HOH241 4.2 28.9 1.0 O M:HOH240 4.3 39.0 1.0 N9 M:0G82 4.3 13.4 1.0 C4 M:0G82 4.4 13.6 1.0 N7 M:0G81 4.5 15.9 1.0 O6 M:0G83 4.6 16.8 1.0 C8 M:0G81 4.7 16.1 1.0 OP1 M:0G81 4.7 20.2 1.0 C5 M:0G81 4.8 15.9 1.0 N7 M:0G83 4.8 14.3 1.0 O5' M:0G82 5.0 15.2 1.0

Zinc binding site 6 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn102 b:41.2 occ:0.80 O M:HOH205 2.1 25.3 1.0 O M:HOH213 2.3 21.9 1.0 O M:HOH201 2.5 31.8 1.0 O M:HOH209 2.6 30.4 1.0 N7 M:0G85 3.0 21.2 1.0 O M:HOH223 3.6 24.9 1.0 C8 M:0G85 3.8 17.0 1.0 O6 M:0G85 3.9 17.8 1.0 C5 M:0G85 3.9 16.5 1.0 OP1 M:0G85 4.3 20.4 1.0 C6 M:0G85 4.3 18.2 1.0 O M:HOH202 4.4 34.0 1.0 N7 M:0G86 4.4 15.9 1.0 O6 M:0G86 4.4 16.4 1.0 O M:HOH229 4.5 43.2 1.0 C5 M:0C84 4.6 16.6 1.0 C4 M:0C84 4.7 15.4 1.0 N4 M:0C84 4.7 17.3 1.0

Zinc binding site 7 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:30.8 occ:0.80 O N:HOH228 2.0 31.0 1.0 O L:HOH245 2.0 25.0 1.0 O N:HOH227 2.0 27.8 1.0 O N:HOH236 2.0 21.7 1.0 O N:HOH207 2.1 27.6 1.0 O N:HOH232 2.2 38.3 1.0 O N:HOH216 4.1 38.5 1.0 N7 N:0G96 4.2 19.1 1.0 O6 N:0G97 4.2 18.0 1.0 O K:HOH232 4.3 34.8 1.0 N7 N:0G97 4.3 14.3 1.0 O L:HOH239 4.5 36.3 1.0 OP1 N:0G96 4.8 28.7 1.0 C8 N:0G96 4.8 20.5 1.0 C5 N:0U95 4.8 19.5 1.0 C4 N:0U95 4.9 17.5 1.0 O4 N:0U95 4.9 21.5 1.0 O2 L:C90 4.9 16.9 1.0 C6 N:0G97 5.0 16.4 1.0

W.Rypniewski, A.Kiliszek, L.Blaszczyk, M.Bejger. Racemic Compound of Rna Duplexes. To Be Published.