Zinc in PDB 6zpc: Cyanophage S-2L Hd Phosphohydrolase (Datz) Bound to Datp

The structure of Cyanophage S-2L Hd Phosphohydrolase (Datz) Bound to Datp, PDB code: 6zpc was solved by D.Czernecki, P.Legrand, M.Delarue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.42 / 1.27
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	141.65, 141.65, 53.73, 90, 90, 120
R / Rfree (%)	12.6 / 14.6

The binding sites of Zinc atom in the Cyanophage S-2L Hd Phosphohydrolase (Datz) Bound to Datp (pdb code 6zpc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cyanophage S-2L Hd Phosphohydrolase (Datz) Bound to Datp, PDB code: 6zpc:

Zinc binding site 1 out of 1 in the Cyanophage S-2L Hd Phosphohydrolase (Datz) Bound to Datp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cyanophage S-2L Hd Phosphohydrolase (Datz) Bound to Datp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:27.6 occ:0.17 O A:HOH322 1.7 25.3 1.0 NE2 A:HIS66 1.9 14.5 1.0 NE2 A:HIS34 2.2 13.5 1.0 OD1 A:ASP119 2.2 21.8 1.0 OD2 A:ASP67 2.9 23.1 1.0 CD2 A:HIS66 2.9 15.3 1.0 CE1 A:HIS66 3.0 15.0 1.0 HD2 A:HIS66 3.1 18.4 1.0 CE1 A:HIS34 3.1 13.6 1.0 HE1 A:HIS66 3.2 18.0 1.0 CD2 A:HIS34 3.2 13.0 1.0 CG A:ASP119 3.2 20.0 1.0 HE1 A:HIS34 3.3 16.4 1.0 HD2 A:HIS34 3.4 15.7 1.0 CG A:ASP67 3.7 21.1 1.0 OD2 A:ASP119 3.7 26.0 1.0 O1A A:DTP201 3.8 46.3 1.0 OD1 A:ASP67 3.9 21.4 1.0 HH12 A:ARG19 4.0 16.4 1.0 O A:HOH307 4.0 51.6 1.0 ND1 A:HIS66 4.0 15.1 1.0 CG A:HIS66 4.0 14.5 1.0 HG22 A:VAL38 4.2 15.1 1.0 HZ2 A:TRP115 4.2 23.2 1.0 HE1 A:TRP115 4.2 20.4 1.0 ND1 A:HIS34 4.3 12.4 1.0 CG A:HIS34 4.3 11.9 1.0 NH1 A:ARG19 4.3 13.6 1.0 HG23 A:VAL38 4.4 15.1 1.0 HH11 A:ARG19 4.4 16.4 1.0 HB2 A:ASP119 4.4 19.1 1.0 CB A:ASP119 4.4 15.9 1.0 O A:HOH402 4.5 20.8 1.0 HA A:ASP119 4.6 16.9 1.0 O A:HOH323 4.6 15.1 1.0 O2A A:DTP201 4.6 34.9 1.0 HG2 A:MET35 4.6 14.3 1.0 CG2 A:VAL38 4.7 12.6 1.0 PA A:DTP201 4.8 43.7 1.0 HD1 A:HIS66 4.8 18.1 1.0 HB2 A:ASP67 4.9 19.5 1.0 NE1 A:TRP115 4.9 17.0 1.0 CB A:ASP67 4.9 16.2 1.0 CZ2 A:TRP115 4.9 19.3 1.0

D.Czernecki, P.Legrand, M.Tekpinar, S.Rosario, P.A.Kaminski, M.Delarue. How Cyanophage S-2L Rejects Adenine and Incorporates 2-Aminoadenine to Saturate Hydrogen Bonding in Its Dna Nat Commun 2021.
ISSN: ESSN 2041-1723