Zinc in PDB 6zop: Structure of the Cysteine-Rich Domain of Piggymac, A Domesticated Piggybac Transposase Involved in Programmed Genome Rearrangements

The binding sites of Zinc atom in the Structure of the Cysteine-Rich Domain of Piggymac, A Domesticated Piggybac Transposase Involved in Programmed Genome Rearrangements (pdb code 6zop). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Cysteine-Rich Domain of Piggymac, A Domesticated Piggybac Transposase Involved in Programmed Genome Rearrangements, PDB code: 6zop:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Cysteine-Rich Domain of Piggymac, A Domesticated Piggybac Transposase Involved in Programmed Genome Rearrangements


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Cysteine-Rich Domain of Piggymac, A Domesticated Piggybac Transposase Involved in Programmed Genome Rearrangements within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn100 b:2.1 occ:1.00 SG A:CYS28 2.3 74.5 1.0 SG A:CYS31 2.3 55.1 1.0 SG A:CYS53 2.3 24.0 1.0 SG A:CYS61 2.4 63.5 1.0 H A:CYS31 3.0 34.1 1.0 HB2 A:CYS31 3.3 51.4 1.0 HB3 A:CYS53 3.3 61.2 1.0 CB A:CYS61 3.4 63.4 1.0 CB A:CYS53 3.4 31.2 1.0 HB3 A:CYS61 3.4 61.3 1.0 CB A:CYS28 3.4 64.2 1.0 CB A:CYS31 3.4 34.4 1.0 HB2 A:CYS28 3.5 33.0 1.0 HB2 A:CYS61 3.5 75.3 1.0 HB3 A:CYS28 3.6 74.3 1.0 HB3 A:GLU30 3.6 33.1 1.0 HB2 A:CYS53 3.6 22.3 1.0 HG22 A:ILE59 3.8 4.3 1.0 N A:CYS31 3.8 32.5 1.0 HB2 A:GLU55 3.9 62.2 1.0 HD13 A:ILE59 4.0 52.5 1.0 H A:GLU30 4.2 71.5 1.0 CA A:CYS31 4.3 54.5 1.0 HB3 A:CYS31 4.3 74.0 1.0 HD12 A:ILE59 4.4 74.4 1.0 CB A:GLU30 4.5 72.1 1.0 HG12 A:ILE59 4.6 30.4 1.0 HB2 A:GLU30 4.6 3.1 1.0 HG21 A:ILE59 4.6 74.3 1.0 CD1 A:ILE59 4.6 52.0 1.0 CG2 A:ILE59 4.7 0.1 1.0 HA A:CYS31 4.8 73.0 1.0 CA A:CYS53 4.8 1.5 1.0 H A:CYS53 4.8 31.0 1.0 OE1 A:GLU55 4.8 3.4 1.0 CA A:CYS61 4.8 43.4 1.0 CB A:GLU55 4.8 23.5 1.0 CA A:CYS28 4.8 43.2 1.0 H A:CYS61 4.9 4.0 1.0 HB3 A:GLU55 4.9 51.3 1.0 C A:GLU30 4.9 10.4 1.0 N A:GLU30 5.0 64.2 1.0 H A:GLY32 5.0 24.0 1.0

Zinc binding site 2 out of 2 in the Structure of the Cysteine-Rich Domain of Piggymac, A Domesticated Piggybac Transposase Involved in Programmed Genome Rearrangements


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Cysteine-Rich Domain of Piggymac, A Domesticated Piggybac Transposase Involved in Programmed Genome Rearrangements within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:62.2 occ:1.00 ND1 A:HIS17 2.0 4.5 1.0 NE2 A:HIS65 2.0 41.2 1.0 SG A:CYS42 2.3 62.5 1.0 SG A:CYS39 2.3 22.4 1.0 CE1 A:HIS17 2.9 53.1 1.0 CE1 A:HIS65 2.9 53.1 1.0 HB3 A:HIS17 3.0 21.3 1.0 HE1 A:HIS17 3.0 71.1 1.0 CD2 A:HIS65 3.1 34.1 1.0 HE1 A:HIS65 3.1 74.3 1.0 CG A:HIS17 3.1 1.3 1.0 HB3 A:CYS39 3.2 54.1 1.0 HB2 A:CYS42 3.3 22.5 1.0 CB A:CYS39 3.3 53.0 1.0 HD2 A:HIS65 3.4 21.0 1.0 CB A:CYS42 3.4 23.3 1.0 HB2 A:CYS39 3.5 63.1 1.0 H A:CYS42 3.5 14.2 1.0 CB A:HIS17 3.6 74.2 1.0 HB2 A:GLU41 3.8 41.3 1.0 N A:CYS42 3.9 24.5 1.0 ND1 A:HIS65 4.1 11.2 1.0 HE1 A:PHE19 4.1 53.5 1.0 NE2 A:HIS17 4.1 12.2 1.0 HB3 A:GLU41 4.2 13.1 1.0 CG A:HIS65 4.2 0.1 1.0 CA A:CYS42 4.2 33.2 1.0 CD2 A:HIS17 4.2 13.3 1.0 HB2 A:HIS17 4.3 53.3 1.0 HB3 A:CYS42 4.3 22.3 1.0 HA A:CYS42 4.4 65.2 1.0 CB A:GLU41 4.5 74.5 1.0 CE1 A:PHE19 4.6 63.4 1.0 HA A:HIS17 4.6 11.3 1.0 C A:GLU41 4.7 14.3 1.0 CA A:CYS39 4.7 52.4 1.0 CA A:HIS17 4.7 54.5 1.0 H A:THR18 4.7 73.1 1.0 HZ A:PHE19 4.9 74.2 1.0 HD1 A:HIS65 4.9 45.3 1.0 HE2 A:HIS17 4.9 14.2 1.0 H A:GLU41 4.9 71.2 1.0 CZ A:PHE19 5.0 14.1 1.0

M.Guerineau, L.Bessa, S.Moriau, E.Lescop, F.Bontems, N.Mathy, E.Guittet, J.Bischerour, M.Betermier, N.Morellet. The Unusual Structure of the Piggymac Cysteine-Rich Domain Reveals Zinc Finger Diversity in Piggybac-Related Transposases. Mob Dna V. 12 12 2021.
ISSN: ISSN 1759-8753
PubMed: 33926516
DOI: 10.1186/S13100-021-00240-4