Atomistry » Zinc » PDB 6zki-6zpu » 6zol
Atomistry »
  Zinc »
    PDB 6zki-6zpu »
      6zol »

Zinc in PDB 6zol: Sars-Cov-2-NSP1-40S Complex, Focused on Head

Enzymatic activity of Sars-Cov-2-NSP1-40S Complex, Focused on Head

All present enzymatic activity of Sars-Cov-2-NSP1-40S Complex, Focused on Head:
4.2.99.18;

Other elements in 6zol:

The structure of Sars-Cov-2-NSP1-40S Complex, Focused on Head also contains other interesting chemical elements:

Magnesium (Mg) 57 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Sars-Cov-2-NSP1-40S Complex, Focused on Head (pdb code 6zol). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Sars-Cov-2-NSP1-40S Complex, Focused on Head, PDB code: 6zol:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6zol

Go back to Zinc Binding Sites List in 6zol
Zinc binding site 1 out of 2 in the Sars-Cov-2-NSP1-40S Complex, Focused on Head


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2-NSP1-40S Complex, Focused on Head within 5.0Å range:
probe atom residue distance (Å) B Occ
d:Zn201

b:32.8
occ:1.00
SG d:CYS39 2.2 15.0 1.0
SG d:CYS24 2.3 16.5 1.0
SG d:CYS42 2.3 14.7 1.0
SG d:CYS21 2.3 16.2 1.0
CB d:CYS42 3.2 14.7 1.0
CB d:CYS21 3.3 16.2 1.0
CB d:CYS24 3.5 16.5 1.0
CB d:CYS39 3.6 15.0 1.0
N d:CYS24 3.8 16.5 1.0
N d:CYS39 4.0 15.0 1.0
CA d:CYS24 4.3 16.5 1.0
CB d:VAL23 4.4 16.9 1.0
CA d:CYS39 4.4 15.0 1.0
CA d:CYS42 4.4 14.7 1.0
N d:CYS42 4.4 14.7 1.0
C d:VAL23 4.7 16.9 1.0
CA d:CYS21 4.7 16.2 1.0
N d:VAL23 4.8 16.9 1.0
CA d:VAL23 4.9 16.9 1.0
O d:CYS39 4.9 15.0 1.0
C d:CYS24 4.9 16.5 1.0
C d:CYS39 5.0 15.0 1.0

Zinc binding site 2 out of 2 in 6zol

Go back to Zinc Binding Sites List in 6zol
Zinc binding site 2 out of 2 in the Sars-Cov-2-NSP1-40S Complex, Focused on Head


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Sars-Cov-2-NSP1-40S Complex, Focused on Head within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Zn500

b:91.7
occ:1.00
SG f:CYS144 2.3 57.7 1.0
SG f:CYS141 2.3 55.4 1.0
SG f:CYS121 2.4 66.7 1.0
SG f:CYS126 2.4 69.2 1.0
CB f:CYS126 3.2 69.2 1.0
CB f:CYS141 3.2 55.4 1.0
CB f:CYS121 3.3 66.7 1.0
CB f:CYS144 3.5 57.7 1.0
OG f:SER123 3.7 67.9 1.0
CB f:SER123 3.9 67.9 1.0
N f:CYS144 4.1 57.7 1.0
CA f:CYS144 4.4 57.7 1.0
CA f:CYS126 4.6 69.2 1.0
CB f:LEU146 4.6 56.7 1.0
CA f:CYS141 4.7 55.4 1.0
CA f:CYS121 4.7 66.7 1.0
O f:CYS126 4.8 69.2 1.0
C f:LYS143 4.9 56.0 1.0
CB f:LYS143 4.9 56.0 1.0
N f:SER123 5.0 67.9 1.0
N f:CYS126 5.0 69.2 1.0

Reference:

K.Schubert, E.D.Karousis, A.Jomaa, A.Scaiola, B.Echeverria, L.A.Gurzeler, M.Leibundgut, V.Thiel, O.Muhlemann, N.Ban. Sars-Cov-2 NSP1 Binds the Ribosomal Mrna Channel to Inhibit Translation. Nat.Struct.Mol.Biol. V. 27 959 2020.
ISSN: ESSN 1545-9985
PubMed: 32908316
DOI: 10.1038/S41594-020-0511-8
Page generated: Tue Oct 29 15:51:11 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy