Zinc in PDB 6zol: Sars-Cov-2-NSP1-40S Complex, Focused on Head

All present enzymatic activity of Sars-Cov-2-NSP1-40S Complex, Focused on Head:
4.2.99.18;

The structure of Sars-Cov-2-NSP1-40S Complex, Focused on Head also contains other interesting chemical elements:

Magnesium

(Mg)

57 atoms

The binding sites of Zinc atom in the Sars-Cov-2-NSP1-40S Complex, Focused on Head (pdb code 6zol). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Sars-Cov-2-NSP1-40S Complex, Focused on Head, PDB code: 6zol:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Sars-Cov-2-NSP1-40S Complex, Focused on Head


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2-NSP1-40S Complex, Focused on Head within 5.0Å range: probe atom residue distance (Å) B Occ d:Zn201 b:32.8 occ:1.00 SG d:CYS39 2.2 15.0 1.0 SG d:CYS24 2.3 16.5 1.0 SG d:CYS42 2.3 14.7 1.0 SG d:CYS21 2.3 16.2 1.0 CB d:CYS42 3.2 14.7 1.0 CB d:CYS21 3.3 16.2 1.0 CB d:CYS24 3.5 16.5 1.0 CB d:CYS39 3.6 15.0 1.0 N d:CYS24 3.8 16.5 1.0 N d:CYS39 4.0 15.0 1.0 CA d:CYS24 4.3 16.5 1.0 CB d:VAL23 4.4 16.9 1.0 CA d:CYS39 4.4 15.0 1.0 CA d:CYS42 4.4 14.7 1.0 N d:CYS42 4.4 14.7 1.0 C d:VAL23 4.7 16.9 1.0 CA d:CYS21 4.7 16.2 1.0 N d:VAL23 4.8 16.9 1.0 CA d:VAL23 4.9 16.9 1.0 O d:CYS39 4.9 15.0 1.0 C d:CYS24 4.9 16.5 1.0 C d:CYS39 5.0 15.0 1.0

Zinc binding site 2 out of 2 in the Sars-Cov-2-NSP1-40S Complex, Focused on Head


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Sars-Cov-2-NSP1-40S Complex, Focused on Head within 5.0Å range: probe atom residue distance (Å) B Occ f:Zn500 b:91.7 occ:1.00 SG f:CYS144 2.3 57.7 1.0 SG f:CYS141 2.3 55.4 1.0 SG f:CYS121 2.4 66.7 1.0 SG f:CYS126 2.4 69.2 1.0 CB f:CYS126 3.2 69.2 1.0 CB f:CYS141 3.2 55.4 1.0 CB f:CYS121 3.3 66.7 1.0 CB f:CYS144 3.5 57.7 1.0 OG f:SER123 3.7 67.9 1.0 CB f:SER123 3.9 67.9 1.0 N f:CYS144 4.1 57.7 1.0 CA f:CYS144 4.4 57.7 1.0 CA f:CYS126 4.6 69.2 1.0 CB f:LEU146 4.6 56.7 1.0 CA f:CYS141 4.7 55.4 1.0 CA f:CYS121 4.7 66.7 1.0 O f:CYS126 4.8 69.2 1.0 C f:LYS143 4.9 56.0 1.0 CB f:LYS143 4.9 56.0 1.0 N f:SER123 5.0 67.9 1.0 N f:CYS126 5.0 69.2 1.0

K.Schubert, E.D.Karousis, A.Jomaa, A.Scaiola, B.Echeverria, L.A.Gurzeler, M.Leibundgut, V.Thiel, O.Muhlemann, N.Ban. Sars-Cov-2 NSP1 Binds the Ribosomal Mrna Channel to Inhibit Translation. Nat.Struct.Mol.Biol. V. 27 959 2020.
ISSN: ESSN 1545-9985
PubMed: 32908316
DOI: 10.1038/S41594-020-0511-8