Zinc in PDB 6zo4: The Pointed End Complex of Dynactin Bound to BICD2

The binding sites of Zinc atom in the The Pointed End Complex of Dynactin Bound to BICD2 (pdb code 6zo4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the The Pointed End Complex of Dynactin Bound to BICD2, PDB code: 6zo4:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the The Pointed End Complex of Dynactin Bound to BICD2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Pointed End Complex of Dynactin Bound to BICD2 within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn501 b:0.8 occ:1.00 NH1 Y:ARG37 1.8 0.2 1.0 SG Y:CYS287 2.3 0.6 1.0 SG Y:CYS33 2.4 0.0 1.0 CZ Y:ARG37 2.7 0.2 1.0 CB Y:CYS30 2.9 0.1 1.0 NH2 Y:ARG37 3.1 0.2 1.0 SG Y:CYS30 3.5 0.1 1.0 CB Y:CYS287 3.6 0.6 1.0 CB Y:CYS33 3.9 0.0 1.0 NE Y:ARG37 3.9 0.2 1.0 N Y:CYS287 4.1 0.6 1.0 O Y:GLU35 4.3 0.2 1.0 CA Y:CYS30 4.3 0.1 1.0 CA Y:CYS287 4.4 0.6 1.0 N Y:CYS33 4.5 0.0 1.0 CB Y:GLN286 4.7 0.9 1.0 CA Y:CYS33 4.7 0.0 1.0 C Y:CYS30 4.7 0.1 1.0 O Y:CYS30 4.8 0.1 1.0 CB Y:CYS284 4.9 0.9 1.0 SG Y:CYS284 4.9 0.9 1.0

Zinc binding site 2 out of 3 in the The Pointed End Complex of Dynactin Bound to BICD2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Pointed End Complex of Dynactin Bound to BICD2 within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn502 b:0.5 occ:1.00 SG Y:CYS51 2.4 0.8 1.0 SG Y:CYS70 2.5 0.7 1.0 CB Y:CYS51 2.9 0.8 1.0 CB Y:CYS73 3.0 0.5 1.0 CB Y:CYS70 3.2 0.7 1.0 CB Y:CYS54 3.4 0.2 1.0 O Y:CYS54 3.5 0.2 1.0 N Y:CYS54 3.7 0.2 1.0 CA Y:CYS54 3.9 0.2 1.0 SG Y:CYS54 4.0 0.2 1.0 N Y:CYS73 4.1 0.5 1.0 SG Y:CYS73 4.1 0.5 1.0 CA Y:CYS73 4.2 0.5 1.0 C Y:CYS54 4.2 0.2 1.0 CA Y:CYS51 4.4 0.8 1.0 CA Y:CYS70 4.7 0.7 1.0 CB Y:SER53 4.7 0.0 1.0 C Y:SER53 4.8 0.0 1.0 C Y:CYS51 5.0 0.8 1.0

Zinc binding site 3 out of 3 in the The Pointed End Complex of Dynactin Bound to BICD2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Pointed End Complex of Dynactin Bound to BICD2 within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn503 b:0.5 occ:1.00 SG Y:CYS114 1.9 0.1 1.0 SG Y:CYS76 2.8 0.9 1.0 SG Y:CYS111 3.1 0.9 1.0 CB Y:CYS76 3.3 0.9 1.0 CB Y:CYS79 3.3 0.3 1.0 N Y:CYS79 3.4 0.3 1.0 CB Y:CYS111 3.5 0.9 1.0 O Y:CYS79 3.6 0.3 1.0 CB Y:CYS114 3.7 0.1 1.0 CA Y:CYS79 3.7 0.3 1.0 C Y:CYS79 3.9 0.3 1.0 SG Y:CYS79 4.3 0.3 1.0 O Y:CYS114 4.5 0.1 1.0 N Y:CYS114 4.5 0.1 1.0 C Y:GLY78 4.5 0.9 1.0 CA Y:CYS114 4.5 0.1 1.0 CB Y:TRP116 4.7 0.9 1.0 CA Y:CYS76 4.7 0.9 1.0 CA Y:GLY78 4.8 0.9 1.0 C Y:CYS114 4.8 0.1 1.0 N Y:GLY78 4.8 0.9 1.0 CA Y:CYS111 5.0 0.9 1.0

C.K.Lau, F.J.O'reilly, B.Santhanam, S.E.Lacey, J.Rappsilber, A.P.Carter. Cryo-Em Reveals the Complex Architecture of the Shoulder and Pointed End of Dynactin To Be Published.