Zinc in PDB 6znl: Cryo-Em Structure of the Dynactin Complex

The binding sites of Zinc atom in the Cryo-Em Structure of the Dynactin Complex (pdb code 6znl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cryo-Em Structure of the Dynactin Complex, PDB code: 6znl:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Cryo-Em Structure of the Dynactin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Dynactin Complex within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn501 b:44.2 occ:1.00 NH1 Y:ARG37 1.8 27.3 1.0 SG Y:CYS287 2.3 27.0 1.0 SG Y:CYS33 2.4 25.4 1.0 CZ Y:ARG37 2.7 27.3 1.0 CB Y:CYS30 2.9 28.4 1.0 NH2 Y:ARG37 3.1 27.3 1.0 SG Y:CYS30 3.5 28.4 1.0 CB Y:CYS287 3.6 27.0 1.0 CB Y:CYS33 3.9 25.4 1.0 NE Y:ARG37 3.9 27.3 1.0 N Y:CYS287 4.1 27.0 1.0 O Y:GLU35 4.3 29.9 1.0 CA Y:CYS30 4.3 28.4 1.0 CA Y:CYS287 4.4 27.0 1.0 N Y:CYS33 4.5 25.4 1.0 CB Y:GLN286 4.7 26.4 1.0 CA Y:CYS33 4.7 25.4 1.0 C Y:CYS30 4.7 28.4 1.0 O Y:CYS30 4.8 28.4 1.0 CB Y:CYS284 4.9 31.0 1.0 SG Y:CYS284 4.9 31.0 1.0

Zinc binding site 2 out of 3 in the Cryo-Em Structure of the Dynactin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of the Dynactin Complex within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn502 b:81.6 occ:1.00 SG Y:CYS51 2.4 9.3 1.0 SG Y:CYS70 2.6 15.9 1.0 CB Y:CYS51 2.9 9.3 1.0 CB Y:CYS73 3.0 18.7 1.0 CB Y:CYS70 3.2 15.9 1.0 CB Y:CYS54 3.4 34.9 1.0 O Y:CYS54 3.5 34.9 1.0 N Y:CYS54 3.7 34.9 1.0 CA Y:CYS54 3.9 34.9 1.0 SG Y:CYS54 4.0 34.9 1.0 N Y:CYS73 4.1 18.7 1.0 SG Y:CYS73 4.1 18.7 1.0 CA Y:CYS73 4.2 18.7 1.0 C Y:CYS54 4.2 34.9 1.0 CA Y:CYS51 4.4 9.3 1.0 CA Y:CYS70 4.7 15.9 1.0 CB Y:SER53 4.7 26.9 1.0 C Y:SER53 4.8 26.9 1.0 C Y:CYS51 5.0 9.3 1.0

Zinc binding site 3 out of 3 in the Cryo-Em Structure of the Dynactin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of the Dynactin Complex within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn503 b:10.2 occ:1.00 SG Y:CYS114 1.9 14.8 1.0 SG Y:CYS76 2.8 18.0 1.0 SG Y:CYS111 3.1 13.2 1.0 CB Y:CYS76 3.3 18.0 1.0 CB Y:CYS79 3.3 23.5 1.0 N Y:CYS79 3.4 23.5 1.0 CB Y:CYS111 3.5 13.2 1.0 O Y:CYS79 3.6 23.5 1.0 CB Y:CYS114 3.7 14.8 1.0 CA Y:CYS79 3.7 23.5 1.0 C Y:CYS79 3.9 23.5 1.0 SG Y:CYS79 4.3 23.5 1.0 O Y:CYS114 4.5 14.8 1.0 N Y:CYS114 4.5 14.8 1.0 C Y:GLY78 4.5 37.6 1.0 CA Y:CYS114 4.5 14.8 1.0 CB Y:TRP116 4.7 10.5 1.0 CA Y:CYS76 4.7 18.0 1.0 CA Y:GLY78 4.8 37.6 1.0 C Y:CYS114 4.8 14.8 1.0 N Y:GLY78 4.8 37.6 1.0 CA Y:CYS111 5.0 13.2 1.0

C.K.Lau, F.J.O'reilly, B.Santhanam, S.E.Lacey, J.Rappsilber, A.P.Carter. Cryo-Em Reveals the Complex Architecture of the Shoulder and Pointed End of Dynactin To Be Published.