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Zinc in PDB 6zkm: Complex I Inhibited By Rotenone, OPEN2

Enzymatic activity of Complex I Inhibited By Rotenone, OPEN2

All present enzymatic activity of Complex I Inhibited By Rotenone, OPEN2:
1.6.99.3; 7.1.1.2;

Other elements in 6zkm:

The structure of Complex I Inhibited By Rotenone, OPEN2 also contains other interesting chemical elements:

Potassium (K) 1 atom
Iron (Fe) 28 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Complex I Inhibited By Rotenone, OPEN2 (pdb code 6zkm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Complex I Inhibited By Rotenone, OPEN2, PDB code: 6zkm:

Zinc binding site 1 out of 1 in 6zkm

Go back to Zinc Binding Sites List in 6zkm
Zinc binding site 1 out of 1 in the Complex I Inhibited By Rotenone, OPEN2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex I Inhibited By Rotenone, OPEN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Zn300

b:33.3
occ:1.00
NE2 b:HIS68 2.0 50.3 1.0
SG b:CYS87 2.3 31.9 1.0
SG b:CYS84 2.3 26.5 1.0
SG b:CYS59 2.3 35.5 1.0
CE1 b:HIS68 2.8 36.2 1.0
CD2 b:HIS68 3.1 35.6 1.0
CB b:CYS84 3.3 28.1 1.0
CB b:CYS59 3.4 26.7 1.0
CB b:CYS87 3.4 23.3 1.0
N b:GLY61 3.6 30.0 1.0
ND1 b:HIS68 3.9 28.3 1.0
N b:CYS87 4.0 23.0 1.0
CA b:GLY61 4.0 32.7 1.0
C b:CYS59 4.1 22.6 1.0
CG b:HIS68 4.1 37.3 1.0
O b:CYS59 4.3 27.5 1.0
CA b:CYS87 4.3 22.1 1.0
N b:ASP60 4.3 27.3 1.0
CA b:CYS59 4.3 27.0 1.0
C b:ASP60 4.3 25.7 1.0
CB b:TYR86 4.6 18.4 1.0
CA b:ASP60 4.6 29.4 1.0
CA b:CYS84 4.7 30.2 1.0
CG2 b:VAL71 5.0 17.6 1.0
C b:TYR86 5.0 20.7 1.0

Reference:

D.Kampjut, L.A.Sazanov. The Coupling Mechanism of Mammalian Respiratory Complex I. Science V. 370 2020.
ISSN: ESSN 1095-9203
PubMed: 32972993
DOI: 10.1126/SCIENCE.ABC4209
Page generated: Tue Oct 29 15:45:43 2024

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