Zinc in PDB 6zab: Structure of the Transcriptional Repressor ATU1419 (Vanr) From Agrobacterium Fabrum in Complex A Palindromic Dna (P6422 Space Group)

The structure of Structure of the Transcriptional Repressor ATU1419 (Vanr) From Agrobacterium Fabrum in Complex A Palindromic Dna (P6422 Space Group), PDB code: 6zab was solved by S.Morera, A.Naretto, A.Vigouroux, P.Legrand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.61 / 2.80
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	179.180, 179.180, 96.740, 90.00, 90.00, 120.00
R / Rfree (%)	18.8 / 19.9

The binding sites of Zinc atom in the Structure of the Transcriptional Repressor ATU1419 (Vanr) From Agrobacterium Fabrum in Complex A Palindromic Dna (P6422 Space Group) (pdb code 6zab). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Transcriptional Repressor ATU1419 (Vanr) From Agrobacterium Fabrum in Complex A Palindromic Dna (P6422 Space Group), PDB code: 6zab:

Zinc binding site 1 out of 1 in the Structure of the Transcriptional Repressor ATU1419 (Vanr) From Agrobacterium Fabrum in Complex A Palindromic Dna (P6422 Space Group)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Transcriptional Repressor ATU1419 (Vanr) From Agrobacterium Fabrum in Complex A Palindromic Dna (P6422 Space Group) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:0.4 occ:1.00 OD1 A:ASN137 2.1 98.6 1.0 NE2 A:HIS192 2.3 77.7 1.0 NE2 A:HIS141 2.3 73.6 1.0 NE2 A:HIS214 2.4 74.5 1.0 O7 A:CIT502 2.4 0.4 1.0 O5 A:CIT502 2.8 0.6 1.0 CE1 A:HIS192 2.9 79.2 1.0 CE1 A:HIS141 3.3 72.0 1.0 CG A:ASN137 3.3 0.5 1.0 CE1 A:HIS214 3.3 75.0 1.0 CD2 A:HIS141 3.3 74.3 1.0 C3 A:CIT502 3.4 0.3 1.0 CD2 A:HIS214 3.4 73.3 1.0 C6 A:CIT502 3.4 0.5 1.0 CD2 A:HIS192 3.5 77.7 1.0 O1 A:CIT502 3.9 0.3 1.0 C2 A:CIT502 3.9 0.9 1.0 ND2 A:ASN137 4.0 95.1 1.0 ND1 A:HIS192 4.2 80.5 1.0 CG A:HIS192 4.5 77.2 1.0 ND1 A:HIS141 4.5 72.0 1.0 CG A:HIS141 4.5 71.2 1.0 C1 A:CIT502 4.5 0.5 1.0 CB A:ASN137 4.5 85.7 1.0 ND1 A:HIS214 4.5 74.5 1.0 CG A:HIS214 4.5 70.8 1.0 OH A:TYR133 4.6 0.1 1.0 O6 A:CIT502 4.6 0.7 1.0 C4 A:CIT502 4.6 0.2 1.0 O A:ASN137 5.0 86.5 1.0

A.Vigouroux, T.Meyer, A.Naretto, P.Legrand, M.Aumont-Nicaise, A.Di Cicco, S.Renoud, J.Dore, D.Levy, L.Vial, C.Lavire, S.Morera. Characterization of the First Tetrameric Transcription Factor of the Gntr Superfamily with Allosteric Regulation From the Bacterial Pathogen Agrobacterium Fabrum Nucleic Acids Res. 2020.
ISSN: ESSN 1362-4962