Zinc in PDB 6za0: Structure of the Transcriptional Repressor ATU1419 (Vanr) in Complex with A Fortuitous Citrate From Agrobacterium Fabrum (P21212 Space Group)

The structure of Structure of the Transcriptional Repressor ATU1419 (Vanr) in Complex with A Fortuitous Citrate From Agrobacterium Fabrum (P21212 Space Group), PDB code: 6za0 was solved by S.Morera, A.Vigouroux, P.Legrand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.78 / 1.65
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	72.221, 145.607, 41.194, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 18.9

The binding sites of Zinc atom in the Structure of the Transcriptional Repressor ATU1419 (Vanr) in Complex with A Fortuitous Citrate From Agrobacterium Fabrum (P21212 Space Group) (pdb code 6za0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Transcriptional Repressor ATU1419 (Vanr) in Complex with A Fortuitous Citrate From Agrobacterium Fabrum (P21212 Space Group), PDB code: 6za0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Transcriptional Repressor ATU1419 (Vanr) in Complex with A Fortuitous Citrate From Agrobacterium Fabrum (P21212 Space Group)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Transcriptional Repressor ATU1419 (Vanr) in Complex with A Fortuitous Citrate From Agrobacterium Fabrum (P21212 Space Group) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:18.3 occ:1.00 NE2 A:HIS141 2.1 18.4 1.0 NE2 A:HIS214 2.1 15.7 1.0 NE2 A:HIS192 2.1 15.7 1.0 OD1 A:ASN137 2.3 13.6 1.0 O7 A:CIT302 2.3 20.3 1.0 O6 A:CIT302 2.3 20.1 1.0 CE1 A:HIS214 3.0 15.4 1.0 CE1 A:HIS192 3.0 15.7 1.0 CE1 A:HIS141 3.1 19.2 1.0 CD2 A:HIS141 3.1 18.0 1.0 C6 A:CIT302 3.2 20.3 1.0 CD2 A:HIS192 3.2 15.7 1.0 CD2 A:HIS214 3.2 16.9 1.0 CG A:ASN137 3.2 19.4 1.0 C3 A:CIT302 3.2 23.0 1.0 ND2 A:ASN137 3.5 17.8 1.0 C2 A:CIT302 4.0 23.3 1.0 O2 A:CIT302 4.2 23.0 1.0 ND1 A:HIS214 4.2 16.6 1.0 ND1 A:HIS192 4.2 17.2 1.0 ND1 A:HIS141 4.2 20.4 1.0 CG A:HIS141 4.2 18.7 1.0 CG A:HIS192 4.3 16.6 1.0 CG A:HIS214 4.3 15.8 1.0 O5 A:CIT302 4.3 23.8 1.0 OH A:TYR133 4.4 20.1 1.0 C4 A:CIT302 4.5 21.8 1.0 C1 A:CIT302 4.5 24.8 1.0 CB A:ASN137 4.6 13.4 1.0 CD1 A:PHE140 4.8 18.0 1.0

Zinc binding site 2 out of 2 in the Structure of the Transcriptional Repressor ATU1419 (Vanr) in Complex with A Fortuitous Citrate From Agrobacterium Fabrum (P21212 Space Group)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Transcriptional Repressor ATU1419 (Vanr) in Complex with A Fortuitous Citrate From Agrobacterium Fabrum (P21212 Space Group) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:18.6 occ:1.00 NE2 B:HIS141 2.1 18.5 1.0 NE2 B:HIS214 2.1 17.0 1.0 NE2 B:HIS192 2.1 15.6 1.0 OD1 B:ASN137 2.2 16.0 1.0 O7 B:CIT302 2.3 19.6 1.0 O5 B:CIT302 2.3 19.5 1.0 CE1 B:HIS214 3.0 16.3 1.0 CE1 B:HIS192 3.0 15.6 1.0 CE1 B:HIS141 3.0 19.4 1.0 CD2 B:HIS141 3.1 18.7 1.0 C6 B:CIT302 3.2 19.2 1.0 CG B:ASN137 3.2 23.0 1.0 CD2 B:HIS192 3.2 15.2 1.0 CD2 B:HIS214 3.2 17.4 1.0 C3 B:CIT302 3.2 20.2 1.0 ND2 B:ASN137 3.5 20.8 1.0 C2 B:CIT302 4.0 21.3 1.0 O1 B:CIT302 4.2 23.2 1.0 ND1 B:HIS141 4.2 20.4 1.0 ND1 B:HIS192 4.2 16.5 1.0 ND1 B:HIS214 4.2 16.9 1.0 CG B:HIS141 4.2 18.9 1.0 CG B:HIS192 4.3 15.6 1.0 CG B:HIS214 4.3 15.7 1.0 O6 B:CIT302 4.3 21.4 1.0 OH B:TYR133 4.4 19.2 1.0 C4 B:CIT302 4.5 21.0 1.0 CB B:ASN137 4.5 12.6 1.0 C1 B:CIT302 4.5 24.3 1.0 CD1 B:PHE140 4.8 15.5 1.0 O B:ASN137 5.0 17.4 1.0

A.Vigouroux, T.Meyer, A.Naretto, P.Legrand, M.Aumont-Nicaise, A.Di Cicco, S.Renoud, J.Dore, D.Levy, L.Vial, C.Lavire, S.Morera. Characterization of the First Tetrameric Transcription Factor of the Gntr Superfamily with Allosteric Regulation From the Bacterial Pathogen Agrobacterium Fabrum Nucleic Acids Res. 2020.
ISSN: ESSN 1362-4962