Zinc in PDB 6z2o: Crystal Structure of Wild Type Ogpa From Akkermansia Muciniphila in P 21 21 21

Protein crystallography data

The structure of Crystal Structure of Wild Type Ogpa From Akkermansia Muciniphila in P 21 21 21, PDB code: 6z2o was solved by B.Trastoy, A.Naegali, I.Anso, J.Sjogren, M.E.Guerin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.63 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.379, 70.170, 94.668, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 20.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Wild Type Ogpa From Akkermansia Muciniphila in P 21 21 21 (pdb code 6z2o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Wild Type Ogpa From Akkermansia Muciniphila in P 21 21 21, PDB code: 6z2o:

Zinc binding site 1 out of 1 in 6z2o

Go back to Zinc Binding Sites List in 6z2o
Zinc binding site 1 out of 1 in the Crystal Structure of Wild Type Ogpa From Akkermansia Muciniphila in P 21 21 21


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Wild Type Ogpa From Akkermansia Muciniphila in P 21 21 21 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn408

b:21.1
occ:0.86
NE2 A:HIS215 2.0 22.6 1.0
O A:HOH502 2.0 29.7 1.0
O1 A:EDO401 2.1 32.3 1.0
NE2 A:HIS205 2.1 18.5 1.0
NE2 A:HIS209 2.1 22.5 1.0
O A:HOH668 2.3 30.2 1.0
CE1 A:HIS215 2.9 29.0 1.0
CD2 A:HIS205 3.0 21.0 1.0
CD2 A:HIS215 3.0 20.3 1.0
CD2 A:HIS209 3.1 18.8 1.0
CE1 A:HIS205 3.1 21.2 1.0
CE1 A:HIS209 3.2 22.1 1.0
C1 A:EDO401 3.3 31.7 1.0
ND1 A:HIS215 4.1 27.4 1.0
CG A:HIS215 4.1 23.4 1.0
CG A:HIS205 4.2 18.2 1.0
ND1 A:HIS205 4.2 18.6 1.0
ND1 A:HIS209 4.3 20.8 1.0
CG A:HIS209 4.3 20.5 1.0
OE2 A:GLU206 4.3 31.0 1.0
C2 A:EDO401 4.4 36.7 1.0
OE1 A:GLU206 4.8 24.6 1.0
CD A:GLU206 4.9 25.6 1.0
CE A:MET231 5.0 20.0 1.0

Reference:

B.Trastoy, A.Naegali, I.Anso, J.Sjogren, M.E.Guerin. Crystal Structure of Wild Type Ogpa From Akkermansia Muciniphila in P 21 21 21 Nat Commun 2020.
ISSN: ESSN 2041-1723
Page generated: Wed Dec 16 13:21:03 2020

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