Zinc in PDB 6z11: Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering

Enzymatic activity of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering

All present enzymatic activity of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering:
2.7.7.6; 3.6.4.12;

Other elements in 6z11:

The structure of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering (pdb code 6z11). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering, PDB code: 6z11:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6z11

Go back to Zinc Binding Sites List in 6z11
Zinc binding site 1 out of 2 in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2001

b:32.6
occ:1.00
SG D:CYS974 2.2 21.5 1.0
SG D:CYS890 2.3 25.7 1.0
SG D:CYS977 2.3 20.4 1.0
SG D:CYS967 2.3 22.3 1.0
NH1 D:ARG962 2.7 22.0 1.0
CB D:CYS974 3.1 21.5 1.0
CB D:CYS967 3.1 22.3 1.0
CB D:CYS977 3.2 20.4 1.0
CB D:CYS890 3.2 25.7 1.0
CA D:CYS967 3.6 22.3 1.0
CZ D:ARG962 3.9 22.0 1.0
N D:CYS977 4.0 20.4 1.0
N D:CYS974 4.0 21.5 1.0
CA D:CYS974 4.1 21.5 1.0
CA D:CYS977 4.1 20.4 1.0
N D:CYS890 4.1 25.7 1.0
CA D:CYS890 4.3 25.7 1.0
NE D:ARG962 4.3 22.0 1.0
N D:THR968 4.4 24.2 1.0
C D:CYS967 4.6 22.3 1.0
N D:CYS967 4.7 22.3 1.0
C D:CYS974 4.8 21.5 1.0
O D:SER963 4.9 20.7 1.0
NH2 D:ARG962 4.9 22.0 1.0
CG2 D:THR892 5.0 28.2 1.0

Zinc binding site 2 out of 2 in 6z11

Go back to Zinc Binding Sites List in 6z11
Zinc binding site 2 out of 2 in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2002

b:95.3
occ:1.00
SG D:CYS75 2.2 69.3 1.0
SG D:CYS62 2.3 73.1 1.0
SG D:CYS78 2.3 71.2 1.0
SG D:CYS60 2.4 69.4 1.0
CB D:CYS60 2.6 69.4 1.0
CB D:CYS75 2.6 69.3 1.0
CB D:CYS62 3.4 73.1 1.0
CA D:CYS60 3.9 69.4 1.0
N D:CYS62 4.0 73.1 1.0
CB D:CYS78 4.0 71.2 1.0
CA D:CYS75 4.1 69.3 1.0
CA D:CYS62 4.3 73.1 1.0
N D:TYR61 4.4 68.7 1.0
N D:GLY63 4.4 70.3 1.0
N D:CYS78 4.4 71.2 1.0
CB D:LYS64 4.5 73.7 1.0
N D:LYS64 4.5 73.7 1.0
C D:CYS60 4.6 69.4 1.0
CA D:CYS78 4.8 71.2 1.0
CG1 D:VAL80 4.8 63.2 1.0
C D:CYS62 4.9 73.1 1.0
C D:CYS75 4.9 69.3 1.0
N D:CYS75 5.0 69.3 1.0

Reference:

T.Kouba, T.Koval, J.Dohnalek, L.Krasny. Held, A Helicase-Like Protein From Gram-Positive Bacteria in Complex with Rna Polymerase To Be Published.
Page generated: Wed Dec 16 13:20:28 2020

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