Atomistry » Zinc » PDB 6yzl-6z85 » 6z11
Atomistry »
  Zinc »
    PDB 6yzl-6z85 »
      6z11 »

Zinc in PDB 6z11: Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering

Enzymatic activity of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering

All present enzymatic activity of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering:
2.7.7.6; 3.6.4.12;

Other elements in 6z11:

The structure of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering (pdb code 6z11). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering, PDB code: 6z11:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6z11

Go back to Zinc Binding Sites List in 6z11
Zinc binding site 1 out of 2 in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2001

b:32.6
occ:1.00
SG D:CYS974 2.2 21.5 1.0
SG D:CYS890 2.3 25.7 1.0
SG D:CYS977 2.3 20.4 1.0
SG D:CYS967 2.3 22.3 1.0
NH1 D:ARG962 2.7 22.0 1.0
CB D:CYS974 3.1 21.5 1.0
CB D:CYS967 3.1 22.3 1.0
CB D:CYS977 3.2 20.4 1.0
CB D:CYS890 3.2 25.7 1.0
CA D:CYS967 3.6 22.3 1.0
CZ D:ARG962 3.9 22.0 1.0
N D:CYS977 4.0 20.4 1.0
N D:CYS974 4.0 21.5 1.0
CA D:CYS974 4.1 21.5 1.0
CA D:CYS977 4.1 20.4 1.0
N D:CYS890 4.1 25.7 1.0
CA D:CYS890 4.3 25.7 1.0
NE D:ARG962 4.3 22.0 1.0
N D:THR968 4.4 24.2 1.0
C D:CYS967 4.6 22.3 1.0
N D:CYS967 4.7 22.3 1.0
C D:CYS974 4.8 21.5 1.0
O D:SER963 4.9 20.7 1.0
NH2 D:ARG962 4.9 22.0 1.0
CG2 D:THR892 5.0 28.2 1.0

Zinc binding site 2 out of 2 in 6z11

Go back to Zinc Binding Sites List in 6z11
Zinc binding site 2 out of 2 in the Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Mycobacterium Smegmatis Held Protein in Complex with Rna Polymerase Core - State III, Primary Channel Dis-Engaged and Active Site Interfering within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2002

b:95.3
occ:1.00
SG D:CYS75 2.2 69.3 1.0
SG D:CYS62 2.3 73.1 1.0
SG D:CYS78 2.3 71.2 1.0
SG D:CYS60 2.4 69.4 1.0
CB D:CYS60 2.6 69.4 1.0
CB D:CYS75 2.6 69.3 1.0
CB D:CYS62 3.4 73.1 1.0
CA D:CYS60 3.9 69.4 1.0
N D:CYS62 4.0 73.1 1.0
CB D:CYS78 4.0 71.2 1.0
CA D:CYS75 4.1 69.3 1.0
CA D:CYS62 4.3 73.1 1.0
N D:TYR61 4.4 68.7 1.0
N D:GLY63 4.4 70.3 1.0
N D:CYS78 4.4 71.2 1.0
CB D:LYS64 4.5 73.7 1.0
N D:LYS64 4.5 73.7 1.0
C D:CYS60 4.6 69.4 1.0
CA D:CYS78 4.8 71.2 1.0
CG1 D:VAL80 4.8 63.2 1.0
C D:CYS62 4.9 73.1 1.0
C D:CYS75 4.9 69.3 1.0
N D:CYS75 5.0 69.3 1.0

Reference:

T.Kouba, T.Koval, J.Dohnalek, L.Krasny. Held, A Helicase-Like Protein From Gram-Positive Bacteria in Complex with Rna Polymerase To Be Published.
Page generated: Tue Oct 29 15:21:44 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy