Zinc in PDB 6xfa: Cryo-Em Structure of Ebv BFLF1

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Ebv BFLF1 (pdb code 6xfa). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 20 binding sites of Zinc where determined in the Cryo-Em Structure of Ebv BFLF1, PDB code: 6xfa:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 20 in 6xfa

Go back to Zinc Binding Sites List in 6xfa
Zinc binding site 1 out of 20 in the Cryo-Em Structure of Ebv BFLF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Ebv BFLF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn500

b:30.0
occ:1.00
SG A:CYS57 2.3 0.8 1.0
ND1 A:HIS132 2.4 0.7 1.0
SG A:CYS138 2.5 0.7 1.0
SG A:CYS54 2.5 0.8 1.0
CB A:CYS138 3.0 0.7 1.0
CE1 A:HIS132 3.0 0.7 1.0
CB A:CYS54 3.3 0.8 1.0
CG A:HIS132 3.6 0.7 1.0
CB A:CYS57 4.1 0.8 1.0
CB A:HIS132 4.1 0.7 1.0
CA A:HIS132 4.3 0.7 1.0
NE2 A:HIS132 4.3 0.7 1.0
CA A:CYS138 4.5 0.7 1.0
N A:CYS57 4.5 0.8 1.0
CD2 A:HIS132 4.6 0.7 1.0
CA A:CYS54 4.8 0.8 1.0
CA A:CYS57 4.9 0.8 1.0
O A:LEU131 4.9 0.7 1.0
N A:CYS138 4.9 0.7 1.0

Zinc binding site 2 out of 20 in 6xfa

Go back to Zinc Binding Sites List in 6xfa
Zinc binding site 2 out of 20 in the Cryo-Em Structure of Ebv BFLF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Ebv BFLF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:30.0
occ:1.00
ND1 A:HIS386 2.2 0.8 1.0
SG A:CYS319 2.3 0.8 1.0
SG A:CYS316 2.3 0.8 1.0
SG A:CYS393 2.3 0.8 1.0
CB A:CYS316 2.8 0.8 1.0
CE1 A:HIS386 3.0 0.8 1.0
CG A:HIS386 3.2 0.8 1.0
CB A:CYS393 3.4 0.8 1.0
CB A:CYS319 3.5 0.8 1.0
CB A:HIS386 3.6 0.8 1.0
N A:CYS319 3.7 0.8 1.0
CA A:CYS319 4.1 0.8 1.0
CA A:CYS393 4.2 0.8 1.0
NE2 A:HIS386 4.2 0.8 1.0
CA A:CYS316 4.2 0.8 1.0
CA A:HIS386 4.3 0.8 1.0
O A:CYS316 4.3 0.8 1.0
CD2 A:HIS386 4.3 0.8 1.0
CB A:LEU318 4.4 0.8 1.0
C A:LEU318 4.5 0.8 1.0
C A:CYS316 4.5 0.8 1.0
CA A:LEU318 4.8 0.8 1.0
N A:LEU318 4.9 0.8 1.0

Zinc binding site 3 out of 20 in 6xfa

Go back to Zinc Binding Sites List in 6xfa
Zinc binding site 3 out of 20 in the Cryo-Em Structure of Ebv BFLF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Ebv BFLF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn500

b:30.0
occ:1.00
SG B:CYS57 2.3 0.8 1.0
ND1 B:HIS132 2.4 0.7 1.0
SG B:CYS138 2.5 0.7 1.0
SG B:CYS54 2.5 0.8 1.0
CB B:CYS138 3.0 0.7 1.0
CE1 B:HIS132 3.0 0.7 1.0
CB B:CYS54 3.3 0.8 1.0
CG B:HIS132 3.6 0.7 1.0
CB B:CYS57 4.1 0.8 1.0
CB B:HIS132 4.1 0.7 1.0
CA B:HIS132 4.3 0.7 1.0
NE2 B:HIS132 4.3 0.7 1.0
CA B:CYS138 4.5 0.7 1.0
N B:CYS57 4.5 0.8 1.0
CD2 B:HIS132 4.6 0.7 1.0
CA B:CYS54 4.8 0.8 1.0
CA B:CYS57 4.9 0.8 1.0
O B:LEU131 4.9 0.7 1.0
N B:CYS138 4.9 0.7 1.0

Zinc binding site 4 out of 20 in 6xfa

Go back to Zinc Binding Sites List in 6xfa
Zinc binding site 4 out of 20 in the Cryo-Em Structure of Ebv BFLF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of Ebv BFLF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:30.0
occ:1.00
ND1 B:HIS386 2.2 0.8 1.0
SG B:CYS319 2.3 0.8 1.0
SG B:CYS316 2.3 0.8 1.0
SG B:CYS393 2.3 0.8 1.0
CB B:CYS316 2.8 0.8 1.0
CE1 B:HIS386 3.0 0.8 1.0
CG B:HIS386 3.2 0.8 1.0
CB B:CYS393 3.4 0.8 1.0
CB B:CYS319 3.5 0.8 1.0
CB B:HIS386 3.6 0.8 1.0
N B:CYS319 3.7 0.8 1.0
CA B:CYS319 4.1 0.8 1.0
CA B:CYS393 4.2 0.8 1.0
NE2 B:HIS386 4.2 0.8 1.0
CA B:CYS316 4.2 0.8 1.0
CA B:HIS386 4.3 0.8 1.0
O B:CYS316 4.3 0.8 1.0
CD2 B:HIS386 4.3 0.8 1.0
CB B:LEU318 4.4 0.8 1.0
C B:LEU318 4.5 0.8 1.0
C B:CYS316 4.5 0.8 1.0
CA B:LEU318 4.8 0.8 1.0
N B:LEU318 4.9 0.8 1.0

Zinc binding site 5 out of 20 in 6xfa

Go back to Zinc Binding Sites List in 6xfa
Zinc binding site 5 out of 20 in the Cryo-Em Structure of Ebv BFLF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Cryo-Em Structure of Ebv BFLF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn500

b:30.0
occ:1.00
SG C:CYS57 2.3 0.8 1.0
ND1 C:HIS132 2.4 0.7 1.0
SG C:CYS138 2.5 0.7 1.0
SG C:CYS54 2.5 0.8 1.0
CB C:CYS138 3.0 0.7 1.0
CE1 C:HIS132 3.0 0.7 1.0
CB C:CYS54 3.3 0.8 1.0
CG C:HIS132 3.6 0.7 1.0
CB C:CYS57 4.1 0.8 1.0
CB C:HIS132 4.1 0.7 1.0
CA C:HIS132 4.3 0.7 1.0
NE2 C:HIS132 4.3 0.7 1.0
CA C:CYS138 4.5 0.7 1.0
N C:CYS57 4.5 0.8 1.0
CD2 C:HIS132 4.6 0.7 1.0
CA C:CYS54 4.8 0.8 1.0
CA C:CYS57 4.9 0.8 1.0
O C:LEU131 4.9 0.7 1.0
N C:CYS138 4.9 0.7 1.0

Zinc binding site 6 out of 20 in 6xfa

Go back to Zinc Binding Sites List in 6xfa
Zinc binding site 6 out of 20 in the Cryo-Em Structure of Ebv BFLF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Cryo-Em Structure of Ebv BFLF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn501

b:30.0
occ:1.00
ND1 C:HIS386 2.2 0.8 1.0
SG C:CYS319 2.3 0.8 1.0
SG C:CYS316 2.3 0.8 1.0
SG C:CYS393 2.3 0.8 1.0
CB C:CYS316 2.8 0.8 1.0
CE1 C:HIS386 3.0 0.8 1.0
CG C:HIS386 3.2 0.8 1.0
CB C:CYS393 3.4 0.8 1.0
CB C:CYS319 3.5 0.8 1.0
CB C:HIS386 3.6 0.8 1.0
N C:CYS319 3.7 0.8 1.0
CA C:CYS319 4.1 0.8 1.0
CA C:CYS393 4.2 0.8 1.0
NE2 C:HIS386 4.2 0.8 1.0
CA C:CYS316 4.2 0.8 1.0
CA C:HIS386 4.3 0.8 1.0
O C:CYS316 4.3 0.8 1.0
CD2 C:HIS386 4.3 0.8 1.0
CB C:LEU318 4.4 0.8 1.0
C C:LEU318 4.5 0.8 1.0
C C:CYS316 4.5 0.8 1.0
CA C:LEU318 4.8 0.8 1.0
N C:LEU318 4.9 0.8 1.0

Zinc binding site 7 out of 20 in 6xfa

Go back to Zinc Binding Sites List in 6xfa
Zinc binding site 7 out of 20 in the Cryo-Em Structure of Ebv BFLF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Cryo-Em Structure of Ebv BFLF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn500

b:30.0
occ:1.00
SG D:CYS57 2.3 0.8 1.0
ND1 D:HIS132 2.4 0.7 1.0
SG D:CYS138 2.5 0.7 1.0
SG D:CYS54 2.5 0.8 1.0
CB D:CYS138 3.0 0.7 1.0
CE1 D:HIS132 3.0 0.7 1.0
CB D:CYS54 3.3 0.8 1.0
CG D:HIS132 3.6 0.7 1.0
CB D:CYS57 4.1 0.8 1.0
CB D:HIS132 4.1 0.7 1.0
CA D:HIS132 4.3 0.7 1.0
NE2 D:HIS132 4.3 0.7 1.0
CA D:CYS138 4.5 0.7 1.0
N D:CYS57 4.5 0.8 1.0
CD2 D:HIS132 4.6 0.7 1.0
CA D:CYS54 4.8 0.8 1.0
CA D:CYS57 4.9 0.8 1.0
O D:LEU131 4.9 0.7 1.0
N D:CYS138 4.9 0.7 1.0

Zinc binding site 8 out of 20 in 6xfa

Go back to Zinc Binding Sites List in 6xfa
Zinc binding site 8 out of 20 in the Cryo-Em Structure of Ebv BFLF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Cryo-Em Structure of Ebv BFLF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn501

b:30.0
occ:1.00
ND1 D:HIS386 2.2 0.8 1.0
SG D:CYS319 2.3 0.8 1.0
SG D:CYS316 2.3 0.8 1.0
SG D:CYS393 2.3 0.8 1.0
CB D:CYS316 2.8 0.8 1.0
CE1 D:HIS386 3.0 0.8 1.0
CG D:HIS386 3.2 0.8 1.0
CB D:CYS393 3.4 0.8 1.0
CB D:CYS319 3.5 0.8 1.0
CB D:HIS386 3.6 0.8 1.0
N D:CYS319 3.7 0.8 1.0
CA D:CYS319 4.1 0.8 1.0
CA D:CYS393 4.2 0.8 1.0
NE2 D:HIS386 4.2 0.8 1.0
CA D:CYS316 4.2 0.8 1.0
CA D:HIS386 4.3 0.8 1.0
O D:CYS316 4.3 0.8 1.0
CD2 D:HIS386 4.3 0.8 1.0
CB D:LEU318 4.4 0.8 1.0
C D:LEU318 4.5 0.8 1.0
C D:CYS316 4.5 0.8 1.0
CA D:LEU318 4.8 0.8 1.0
N D:LEU318 4.9 0.8 1.0

Zinc binding site 9 out of 20 in 6xfa

Go back to Zinc Binding Sites List in 6xfa
Zinc binding site 9 out of 20 in the Cryo-Em Structure of Ebv BFLF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Cryo-Em Structure of Ebv BFLF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn500

b:30.0
occ:1.00
SG E:CYS57 2.3 0.8 1.0
ND1 E:HIS132 2.4 0.7 1.0
SG E:CYS138 2.5 0.7 1.0
SG E:CYS54 2.5 0.8 1.0
CB E:CYS138 3.0 0.7 1.0
CE1 E:HIS132 3.1 0.7 1.0
CB E:CYS54 3.3 0.8 1.0
CG E:HIS132 3.6 0.7 1.0
CB E:CYS57 4.1 0.8 1.0
CB E:HIS132 4.1 0.7 1.0
CA E:HIS132 4.3 0.7 1.0
NE2 E:HIS132 4.3 0.7 1.0
CA E:CYS138 4.5 0.7 1.0
N E:CYS57 4.5 0.8 1.0
CD2 E:HIS132 4.6 0.7 1.0
CA E:CYS54 4.8 0.8 1.0
CA E:CYS57 4.9 0.8 1.0
O E:LEU131 4.9 0.7 1.0
N E:CYS138 4.9 0.7 1.0

Zinc binding site 10 out of 20 in 6xfa

Go back to Zinc Binding Sites List in 6xfa
Zinc binding site 10 out of 20 in the Cryo-Em Structure of Ebv BFLF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Cryo-Em Structure of Ebv BFLF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn501

b:30.0
occ:1.00
ND1 E:HIS386 2.2 0.8 1.0
SG E:CYS319 2.3 0.8 1.0
SG E:CYS316 2.3 0.8 1.0
SG E:CYS393 2.3 0.8 1.0
CB E:CYS316 2.8 0.8 1.0
CE1 E:HIS386 3.0 0.8 1.0
CG E:HIS386 3.2 0.8 1.0
CB E:CYS393 3.4 0.8 1.0
CB E:CYS319 3.5 0.8 1.0
CB E:HIS386 3.6 0.8 1.0
N E:CYS319 3.7 0.8 1.0
CA E:CYS319 4.1 0.8 1.0
CA E:CYS393 4.2 0.8 1.0
NE2 E:HIS386 4.2 0.8 1.0
CA E:CYS316 4.2 0.8 1.0
CA E:HIS386 4.3 0.8 1.0
O E:CYS316 4.3 0.8 1.0
CD2 E:HIS386 4.3 0.8 1.0
CB E:LEU318 4.4 0.8 1.0
C E:LEU318 4.5 0.8 1.0
C E:CYS316 4.5 0.8 1.0
CA E:LEU318 4.8 0.8 1.0
N E:LEU318 4.9 0.8 1.0

Reference:

A.L.Didychuk, S.N.Gates, M.R.Gardner, L.M.Strong, A.Martin, B.A.Glaunsinger. A Pentameric Protein Ring with Novel Architecture Is Required For Herpesviral Packaging. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 33554858
DOI: 10.7554/ELIFE.62261
Page generated: Wed Mar 3 16:12:53 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy