Atomistry » Zinc » PDB 6wp2-6x43 » 6wvk
Atomistry »
  Zinc »
    PDB 6wp2-6x43 »
      6wvk »

Zinc in PDB 6wvk: Cryo-Em Structure of Bacillus Subtilis Rna Polymerase in Complex with Held

Enzymatic activity of Cryo-Em Structure of Bacillus Subtilis Rna Polymerase in Complex with Held

All present enzymatic activity of Cryo-Em Structure of Bacillus Subtilis Rna Polymerase in Complex with Held:
2.7.7.6; 3.6.4.12;

Other elements in 6wvk:

The structure of Cryo-Em Structure of Bacillus Subtilis Rna Polymerase in Complex with Held also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Bacillus Subtilis Rna Polymerase in Complex with Held (pdb code 6wvk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Bacillus Subtilis Rna Polymerase in Complex with Held, PDB code: 6wvk:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6wvk

Go back to Zinc Binding Sites List in 6wvk
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Bacillus Subtilis Rna Polymerase in Complex with Held


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Bacillus Subtilis Rna Polymerase in Complex with Held within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2000

b:0.7
occ:1.00
SG D:CYS75 2.2 94.5 1.0
SG D:CYS62 2.3 95.3 1.0
SG D:CYS60 2.3 92.1 1.0
SG D:CYS78 2.4 96.4 1.0
CB D:CYS60 3.3 92.1 1.0
CB D:CYS75 3.3 94.5 1.0
CB D:CYS62 3.4 95.3 1.0
CB D:CYS78 3.5 96.4 1.0
CG1 D:VAL80 4.0 83.7 1.0
O D:LYS64 4.1 92.9 1.0
O D:GLY79 4.3 94.5 1.0
N D:CYS78 4.5 96.4 1.0
CA D:CYS78 4.5 96.4 1.0
O D:CYS75 4.5 94.5 1.0
N D:CYS62 4.6 95.3 1.0
CA D:CYS62 4.6 95.3 1.0
CA D:CYS60 4.6 92.1 1.0
CA D:CYS75 4.6 94.5 1.0
CD1 D:TYR65 4.8 90.6 1.0
CB D:VAL80 4.9 83.7 1.0
C D:CYS75 5.0 94.5 1.0

Zinc binding site 2 out of 2 in 6wvk

Go back to Zinc Binding Sites List in 6wvk
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Bacillus Subtilis Rna Polymerase in Complex with Held


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Bacillus Subtilis Rna Polymerase in Complex with Held within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2002

b:42.7
occ:1.00
SG D:CYS902 2.0 27.1 1.0
SG D:CYS818 2.2 34.1 1.0
SG D:CYS899 2.3 28.1 1.0
SG D:CYS892 2.3 31.5 1.0
CB D:CYS902 3.0 27.1 1.0
CB D:CYS818 3.3 34.1 1.0
CB D:CYS892 3.3 31.5 1.0
CB D:CYS899 3.4 28.1 1.0
CA D:CYS892 3.7 31.5 1.0
N D:CYS818 3.9 34.1 1.0
N D:CYS899 4.1 28.1 1.0
NH2 D:ARG887 4.1 28.7 1.0
CA D:CYS902 4.2 27.1 1.0
N D:CYS902 4.2 27.1 1.0
CA D:CYS899 4.2 28.1 1.0
CA D:CYS818 4.2 34.1 1.0
N D:ASN893 4.3 32.8 1.0
OG1 D:THR894 4.4 31.5 1.0
C D:CYS892 4.5 31.5 1.0
OG1 D:THR820 4.5 37.6 1.0
C D:CYS899 4.8 28.1 1.0
O D:CYS899 4.9 28.1 1.0
N D:CYS892 4.9 31.5 1.0
CZ D:ARG887 5.0 28.7 1.0

Reference:

T.P.Newing, A.J.Oakley, M.Miller, C.Dawson, S.Brown, J.Bouwer, G.Tolun, P.J.Lewis. Transcription Complex Recycling By the Atpase Motor Protein Held To Be Published.
Page generated: Tue Oct 29 10:25:09 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy