Zinc in PDB 6wsj: Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Cyclopeptide DES4.3.1

The structure of Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Cyclopeptide DES4.3.1, PDB code: 6wsj was solved by P.R.Watson, D.W.Christianson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.76 / 1.70
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.5, 84, 94.42, 90, 90, 90
R / Rfree (%)	15.4 / 17.6

The structure of Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Cyclopeptide DES4.3.1 also contains other interesting chemical elements:

Potassium

(K)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Cyclopeptide DES4.3.1 (pdb code 6wsj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Cyclopeptide DES4.3.1, PDB code: 6wsj:

Zinc binding site 1 out of 1 in the Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Cyclopeptide DES4.3.1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Cyclopeptide DES4.3.1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:7.2 occ:1.00 OD2 A:ASP705 2.0 7.4 1.0 OD1 A:ASP612 2.1 6.0 1.0 ND1 A:HIS614 2.1 6.8 1.0 SH I:U2M5 2.3 11.0 1.0 CG A:ASP612 2.7 5.6 1.0 OD2 A:ASP612 2.8 7.0 1.0 CE1 A:HIS614 2.9 8.1 1.0 CG A:ASP705 3.0 9.5 1.0 CG A:HIS614 3.2 8.5 1.0 OD1 A:ASP705 3.4 8.2 1.0 CZ I:U2M5 3.6 9.7 1.0 CB A:HIS614 3.6 6.9 1.0 CE I:U2M5 3.7 11.2 1.0 N A:HIS614 3.9 5.6 1.0 NE2 A:HIS614 4.1 8.5 1.0 NE2 A:HIS573 4.1 8.0 1.0 CB A:ASP612 4.2 3.9 1.0 CA A:GLY743 4.2 6.8 1.0 CD2 A:HIS614 4.2 7.4 1.0 CG1 A:VAL613 4.3 6.4 1.0 CB A:ASP705 4.4 6.2 1.0 CA A:HIS614 4.4 4.2 1.0 N A:VAL613 4.4 6.0 1.0 CE2 A:TYR745 4.4 7.8 1.0 CE1 A:HIS573 4.5 7.4 1.0 NE2 A:HIS574 4.6 7.2 1.0 OH A:TYR745 4.6 10.7 1.0 N A:GLY743 4.7 7.0 1.0 C A:VAL613 4.8 8.4 1.0 C A:ASP612 4.9 5.8 1.0 CA A:ASP612 4.9 7.0 1.0

P.R.Watson, D.W.Christianson. Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Cyclopeptide DES4.3.1 To Be Published.