Zinc in PDB 6wmu: E. Coli RNAPS70-Sspa-Gada Dna Complex

Enzymatic activity of E. Coli RNAPS70-Sspa-Gada Dna Complex

All present enzymatic activity of E. Coli RNAPS70-Sspa-Gada Dna Complex:
2.7.7.6;

Other elements in 6wmu:

The structure of E. Coli RNAPS70-Sspa-Gada Dna Complex also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the E. Coli RNAPS70-Sspa-Gada Dna Complex (pdb code 6wmu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the E. Coli RNAPS70-Sspa-Gada Dna Complex, PDB code: 6wmu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6wmu

Go back to Zinc Binding Sites List in 6wmu
Zinc binding site 1 out of 2 in the E. Coli RNAPS70-Sspa-Gada Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of E. Coli RNAPS70-Sspa-Gada Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2002

b:0.8
occ:1.00
SG D:CYS85 2.2 80.2 1.0
SG D:CYS70 2.2 81.7 1.0
SG D:CYS88 2.3 80.9 1.0
SG D:CYS72 2.3 82.7 1.0
CB D:CYS85 2.8 80.2 1.0
CB D:CYS70 2.9 81.7 1.0
CB D:CYS72 3.5 82.7 1.0
N D:CYS72 3.6 82.7 1.0
O D:CYS88 3.8 80.9 1.0
N D:CYS88 3.9 80.9 1.0
CB D:CYS88 3.9 80.9 1.0
CA D:CYS72 4.0 82.7 1.0
N D:LEU71 4.1 79.1 1.0
CA D:CYS70 4.2 81.7 1.0
CA D:CYS85 4.3 80.2 1.0
C D:CYS72 4.3 82.7 1.0
CA D:CYS88 4.3 80.9 1.0
CD2 D:TYR75 4.4 83.1 1.0
N D:LYS74 4.4 82.5 1.0
CB D:LYS74 4.4 82.5 1.0
C D:CYS70 4.4 81.7 1.0
C D:CYS88 4.5 80.9 1.0
N D:GLY73 4.5 84.2 1.0
CB D:LYS87 4.6 81.3 1.0
C D:LEU71 4.7 79.1 1.0
CE2 D:TYR75 4.7 83.1 1.0
O D:CYS72 4.8 82.7 1.0
C D:CYS85 4.8 80.2 1.0
N D:LYS87 4.9 81.3 1.0
CA D:LEU71 4.9 79.1 1.0
C D:LYS87 4.9 81.3 1.0
CA D:LYS74 5.0 82.5 1.0

Zinc binding site 2 out of 2 in 6wmu

Go back to Zinc Binding Sites List in 6wmu
Zinc binding site 2 out of 2 in the E. Coli RNAPS70-Sspa-Gada Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of E. Coli RNAPS70-Sspa-Gada Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2003

b:0.5
occ:1.00
SG D:CYS888 2.2 87.8 1.0
SG D:CYS895 2.2 83.2 1.0
SG D:CYS898 2.2 82.1 1.0
SG D:CYS814 2.3 88.3 1.0
CB D:CYS898 2.6 82.1 1.0
CB D:CYS895 2.9 83.2 1.0
CB D:CYS888 3.1 87.8 1.0
NH2 D:ARG883 3.4 88.1 1.0
CB D:CYS814 3.5 88.3 1.0
N D:CYS895 3.5 83.2 1.0
N D:CYS898 3.6 82.1 1.0
CA D:CYS898 3.6 82.1 1.0
CA D:CYS888 3.7 87.8 1.0
CA D:CYS895 3.8 83.2 1.0
N D:CYS814 4.1 88.3 1.0
OG1 D:THR890 4.1 87.8 1.0
N D:ASP889 4.1 90.4 1.0
O D:CYS895 4.2 83.2 1.0
C D:CYS895 4.3 83.2 1.0
CZ D:ARG883 4.4 88.1 1.0
C D:CYS888 4.4 87.8 1.0
CA D:CYS814 4.4 88.3 1.0
C D:VAL894 4.8 78.5 1.0
C D:CYS898 4.8 82.1 1.0
C D:HIS897 4.9 81.3 1.0
NE D:ARG883 4.9 88.1 1.0
N D:CYS888 4.9 87.8 1.0

Reference:

B.A.Travis, K.M.Ramsey, S.M.Prezioso, T.Tallo, J.M.Wandzilak, A.Hsu, M.Borgnia, A.Bartesaghi, S.L.Dove, R.G.Brennan, M.A.Schumacher. Structural Basis For Virulence Activation of Francisella Tularensis. Mol.Cell 2020.
ISSN: ISSN 1097-2765
PubMed: 33217319
DOI: 10.1016/J.MOLCEL.2020.10.035
Page generated: Wed Dec 16 13:05:43 2020

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