Zinc in PDB 6wjn: Sd-Like State of Human 26S Proteasome with Non-Cleavable M1-Linked Hexaubiquitin and E3 Ubiquitin Ligase E6AP/UBE3A

Enzymatic activity of Sd-Like State of Human 26S Proteasome with Non-Cleavable M1-Linked Hexaubiquitin and E3 Ubiquitin Ligase E6AP/UBE3A

All present enzymatic activity of Sd-Like State of Human 26S Proteasome with Non-Cleavable M1-Linked Hexaubiquitin and E3 Ubiquitin Ligase E6AP/UBE3A:
3.4.25.1;

Zinc Binding Sites:

The binding sites of Zinc atom in the Sd-Like State of Human 26S Proteasome with Non-Cleavable M1-Linked Hexaubiquitin and E3 Ubiquitin Ligase E6AP/UBE3A (pdb code 6wjn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Sd-Like State of Human 26S Proteasome with Non-Cleavable M1-Linked Hexaubiquitin and E3 Ubiquitin Ligase E6AP/UBE3A, PDB code: 6wjn:

Zinc binding site 1 out of 1 in 6wjn

Go back to Zinc Binding Sites List in 6wjn
Zinc binding site 1 out of 1 in the Sd-Like State of Human 26S Proteasome with Non-Cleavable M1-Linked Hexaubiquitin and E3 Ubiquitin Ligase E6AP/UBE3A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sd-Like State of Human 26S Proteasome with Non-Cleavable M1-Linked Hexaubiquitin and E3 Ubiquitin Ligase E6AP/UBE3A within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Zn401

b:0.7
occ:1.00
NE2 c:HIS113 2.0 0.7 1.0
O c:SER114 2.1 1.0 1.0
CD2 c:HIS115 2.2 0.8 1.0
CB c:GLU52 2.3 0.4 1.0
NE2 c:HIS115 2.7 0.8 1.0
CD2 c:HIS113 2.8 0.7 1.0
CE1 c:HIS113 2.8 0.7 1.0
C c:SER114 3.3 1.0 1.0
CG c:HIS115 3.3 0.8 1.0
CA c:GLU52 3.6 0.4 1.0
O c:VAL53 3.7 0.4 1.0
ND1 c:HIS113 3.8 0.7 1.0
CG c:HIS113 3.8 0.7 1.0
CE1 c:HIS115 3.8 0.8 1.0
CA c:HIS115 3.9 0.8 1.0
C c:GLU52 3.9 0.4 1.0
N c:VAL53 3.9 0.4 1.0
N c:HIS115 4.0 0.8 1.0
ND1 c:HIS115 4.1 0.8 1.0
CB c:HIS115 4.1 0.8 1.0
N c:SER114 4.3 1.0 1.0
CA c:SER114 4.4 1.0 1.0
C c:VAL53 4.5 0.4 1.0
O c:GLU52 4.7 0.4 1.0
N c:GLU52 4.7 0.4 1.0
CA c:VAL53 4.9 0.4 1.0
CB c:VAL82 4.9 0.3 1.0

Reference:

X.Chen, Z.Dorris, D.Shi, R.K.Huang, H.Khant, T.Fox, N.De Val, D.Williams, P.Zhang, K.J.Walters. Cryo-Em Reveals Unanchored M1-Ubiquitin Chain Binding at HRPN11 of the 26S Proteasome. Structure V. 28 1206 2020.
ISSN: ISSN 0969-2126
PubMed: 32783951
DOI: 10.1016/J.STR.2020.07.011
Page generated: Wed Dec 16 13:04:54 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy