Atomistry » Zinc » PDB 6wbz-6woy » 6wjj
Atomistry »
  Zinc »
    PDB 6wbz-6woy »
      6wjj »

Zinc in PDB 6wjj: Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor

Other elements in 6wjj:

The structure of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor also contains other interesting chemical elements:

Calcium (Ca) 16 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor (pdb code 6wjj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor, PDB code: 6wjj:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6wjj

Go back to Zinc Binding Sites List in 6wjj
Zinc binding site 1 out of 4 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn802

b:91.0
occ:1.00
 O L:TYR728 2.2 70.9 1.0
CD2 L:TYR728 2.5 70.9 1.0
CG L:TYR728 2.6 70.9 1.0
CD1 L:TYR728 2.7 70.9 1.0
CE2 L:TYR728 2.7 70.9 1.0
CZ L:TYR728 2.8 70.9 1.0
CE1 L:TYR728 2.8 70.9 1.0
C L:TYR728 3.0 70.9 1.0
CA L:TYR728 3.4 70.9 1.0
CB L:TYR728 3.5 70.9 1.0
OH L:TYR728 3.8 70.9 1.0
CB L:GLU735 4.0 66.2 1.0
N L:GLY729 4.1 67.7 1.0
CG L:GLU735 4.1 66.2 1.0
OE1 L:GLU735 4.1 66.2 1.0
OG1 L:THR731 4.2 68.8 1.0
CD L:GLU735 4.4 66.2 1.0
CA L:GLY729 4.5 67.7 1.0
CB L:THR731 4.8 68.8 1.0
N L:TYR728 4.8 70.9 1.0

Zinc binding site 2 out of 4 in 6wjj

Go back to Zinc Binding Sites List in 6wjj
Zinc binding site 2 out of 4 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn802

b:91.0
occ:1.00
 O I:TYR728 2.2 70.9 1.0
CD2 I:TYR728 2.5 70.9 1.0
CG I:TYR728 2.6 70.9 1.0
CD1 I:TYR728 2.7 70.9 1.0
CE2 I:TYR728 2.7 70.9 1.0
CZ I:TYR728 2.8 70.9 1.0
CE1 I:TYR728 2.8 70.9 1.0
C I:TYR728 3.0 70.9 1.0
CA I:TYR728 3.4 70.9 1.0
CB I:TYR728 3.5 70.9 1.0
OH I:TYR728 3.8 70.9 1.0
CB I:GLU735 4.0 66.2 1.0
N I:GLY729 4.1 67.7 1.0
CG I:GLU735 4.1 66.2 1.0
OE1 I:GLU735 4.1 66.2 1.0
OG1 I:THR731 4.2 68.8 1.0
CD I:GLU735 4.4 66.2 1.0
CA I:GLY729 4.5 67.7 1.0
CB I:THR731 4.8 68.8 1.0
N I:TYR728 4.8 70.9 1.0

Zinc binding site 3 out of 4 in 6wjj

Go back to Zinc Binding Sites List in 6wjj
Zinc binding site 3 out of 4 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn802

b:91.0
occ:1.00
 O J:TYR728 2.2 70.9 1.0
CD2 J:TYR728 2.5 70.9 1.0
CG J:TYR728 2.6 70.9 1.0
CD1 J:TYR728 2.7 70.9 1.0
CE2 J:TYR728 2.7 70.9 1.0
CZ J:TYR728 2.8 70.9 1.0
CE1 J:TYR728 2.8 70.9 1.0
C J:TYR728 3.0 70.9 1.0
CA J:TYR728 3.4 70.9 1.0
CB J:TYR728 3.5 70.9 1.0
OH J:TYR728 3.8 70.9 1.0
CB J:GLU735 4.0 66.2 1.0
N J:GLY729 4.1 67.7 1.0
CG J:GLU735 4.1 66.2 1.0
OE1 J:GLU735 4.1 66.2 1.0
OG1 J:THR731 4.2 68.8 1.0
CD J:GLU735 4.4 66.2 1.0
CA J:GLY729 4.5 67.7 1.0
CB J:THR731 4.8 68.8 1.0
N J:TYR728 4.8 70.9 1.0

Zinc binding site 4 out of 4 in 6wjj

Go back to Zinc Binding Sites List in 6wjj
Zinc binding site 4 out of 4 in the Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Anthrax Octamer Prechannel Bound to Full-Length Lethal Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn802

b:91.0
occ:1.00
 O K:TYR728 2.2 70.9 1.0
CD2 K:TYR728 2.5 70.9 1.0
CG K:TYR728 2.6 70.9 1.0
CD1 K:TYR728 2.7 70.9 1.0
CE2 K:TYR728 2.7 70.9 1.0
CZ K:TYR728 2.8 70.9 1.0
CE1 K:TYR728 2.8 70.9 1.0
C K:TYR728 3.0 70.9 1.0
CA K:TYR728 3.4 70.9 1.0
CB K:TYR728 3.5 70.9 1.0
OH K:TYR728 3.8 70.9 1.0
CB K:GLU735 4.0 66.2 1.0
N K:GLY729 4.1 67.7 1.0
CG K:GLU735 4.1 66.2 1.0
OE1 K:GLU735 4.1 66.2 1.0
OG1 K:THR731 4.2 68.8 1.0
CD K:GLU735 4.4 66.2 1.0
CA K:GLY729 4.5 67.7 1.0
CB K:THR731 4.8 68.8 1.0
N K:TYR728 4.8 70.9 1.0

Reference:

K.Zhou, S.Liu, N.J.Hardenbrook, Y.Cui, B.A.Krantz, Z.H.Zhou. Atomic Structures of Anthrax Prechannel Bound with Full-Length Lethal and Edema Factors. Structure V. 28 879 2020.
ISSN: ISSN 0969-2126
PubMed: 32521227
DOI: 10.1016/J.STR.2020.05.009
Page generated: Tue Oct 29 10:09:20 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy