Zinc in PDB 6vda: Metal-Bound C-Terminal Domain of Czcd Transporter From Thermotoga Maritima

Protein crystallography data

The structure of Metal-Bound C-Terminal Domain of Czcd Transporter From Thermotoga Maritima, PDB code: 6vda was solved by M.J.Maher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.76 / 2.40
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 97.420, 97.420, 84.060, 90.00, 90.00, 120.00
R / Rfree (%) 23.4 / 28.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Metal-Bound C-Terminal Domain of Czcd Transporter From Thermotoga Maritima (pdb code 6vda). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Metal-Bound C-Terminal Domain of Czcd Transporter From Thermotoga Maritima, PDB code: 6vda:

Zinc binding site 1 out of 1 in 6vda

Go back to Zinc Binding Sites List in 6vda
Zinc binding site 1 out of 1 in the Metal-Bound C-Terminal Domain of Czcd Transporter From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Metal-Bound C-Terminal Domain of Czcd Transporter From Thermotoga Maritima within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:88.3
occ:1.00
OE2 A:GLU288 1.7 86.7 1.0
OE1 A:GLU294 2.1 1.0 1.0
NE2 A:HIS234 2.1 75.8 1.0
OD2 A:ASP250 2.2 76.5 1.0
CD A:GLU288 2.6 84.7 1.0
CD A:GLU294 2.8 0.7 1.0
OE1 A:GLU288 2.8 88.3 1.0
OE2 A:GLU294 2.8 0.8 1.0
CE1 A:HIS234 2.9 76.4 1.0
CG A:ASP250 3.1 75.5 1.0
CD2 A:HIS234 3.2 78.2 1.0
CB A:ASP250 3.3 75.4 1.0
CG A:GLU288 4.0 80.8 1.0
ND1 A:HIS234 4.0 75.9 1.0
CG A:HIS234 4.2 77.3 1.0
OD1 A:ASP250 4.2 76.5 1.0
CG A:GLU294 4.3 0.5 1.0
ND2 A:ASN292 4.6 90.6 1.0
CA A:ASP250 4.8 73.2 1.0
CD A:ARG235 4.8 94.8 1.0
NE A:ARG235 4.9 0.3 1.0

Reference:

S.R.Udagedara, D.M.La Porta, C.Spehar, G.Purohit, M.J.A.Hein, M.E.Fatmous, G.P.Casas Garcia, K.Ganio, C.A.Mcdevitt, M.J.Maher. Structural and Functional Characterizations of the C-Terminal Domains of Czcd Proteins. J.Inorg.Biochem. V. 208 11087 2020.
ISSN: ISSN 0162-0134
PubMed: 32505855
DOI: 10.1016/J.JINORGBIO.2020.111087
Page generated: Wed Dec 16 13:01:31 2020

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