Zinc in PDB 6v4c: Culex Quinquefasciatus D7 Long Form 1- CXD7L1 in Complex with Adp

The structure of Culex Quinquefasciatus D7 Long Form 1- CXD7L1 in Complex with Adp, PDB code: 6v4c was solved by E.Calvo, D.N.Garboczi, I.Martin-Martin, A.G.Gittis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.02 / 1.97
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	76.660, 84.320, 132.070, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 23.5

The binding sites of Zinc atom in the Culex Quinquefasciatus D7 Long Form 1- CXD7L1 in Complex with Adp (pdb code 6v4c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Culex Quinquefasciatus D7 Long Form 1- CXD7L1 in Complex with Adp, PDB code: 6v4c:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Culex Quinquefasciatus D7 Long Form 1- CXD7L1 in Complex with Adp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Culex Quinquefasciatus D7 Long Form 1- CXD7L1 in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn311 b:42.4 occ:0.69 OE2 A:GLU249 2.0 35.4 1.0 ND1 A:HIS172 2.1 37.7 1.0 CD A:GLU249 2.6 38.4 1.0 OE1 A:GLU249 2.7 38.1 1.0 CE1 A:HIS172 3.0 41.0 1.0 CG A:HIS172 3.1 37.4 1.0 CB A:HIS172 3.5 38.6 1.0 CA A:HIS172 3.9 38.1 1.0 CG A:GLU249 4.1 36.5 1.0 NE2 A:HIS172 4.1 39.8 1.0 CD2 A:HIS172 4.2 38.2 1.0 O A:LYS171 4.3 41.1 1.0 O A:HOH422 4.5 45.3 1.0 N A:HIS172 4.7 36.7 1.0 C A:LYS171 4.8 40.9 1.0 OH A:TYR244 5.0 38.2 1.0

Zinc binding site 2 out of 2 in the Culex Quinquefasciatus D7 Long Form 1- CXD7L1 in Complex with Adp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Culex Quinquefasciatus D7 Long Form 1- CXD7L1 in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn312 b:59.5 occ:0.61 OD2 A:ASP219 2.8 42.8 1.0 CG A:ASP219 4.1 56.8 1.0 OD1 A:ASP219 4.8 56.1 1.0

I.Martin-Martin, A.Paige, P.C.Valenzuela Leon, A.G.Gittis, O.Kern, B.Bonilla, A.C.Chagas, S.Ganesan, L.B.Smith, D.N.Garboczi, E.Calvo. Adp Binding By the Culex Quinquefasciatus Mosquito D7 Salivary Protein Enhances Blood Feeding on Mammals. Nat Commun V. 11 2911 2020.
ISSN: ESSN 2041-1723
PubMed: 32518308
DOI: 10.1038/S41467-020-16665-Z