Zinc in PDB 6v3q: Crystal Structure of the Metallo-Beta-Lactamase Fim-1 From Pseudomonas Aeruginosa in the Mono-Zinc Form

The structure of Crystal Structure of the Metallo-Beta-Lactamase Fim-1 From Pseudomonas Aeruginosa in the Mono-Zinc Form, PDB code: 6v3q was solved by Y.Kim, C.Hatzos-Skintges, M.Endres, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.93 / 2.40
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	128.109, 128.109, 41.420, 90.00, 90.00, 120.00
R / Rfree (%)	16.5 / 18.5

The binding sites of Zinc atom in the Crystal Structure of the Metallo-Beta-Lactamase Fim-1 From Pseudomonas Aeruginosa in the Mono-Zinc Form (pdb code 6v3q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Metallo-Beta-Lactamase Fim-1 From Pseudomonas Aeruginosa in the Mono-Zinc Form, PDB code: 6v3q:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Metallo-Beta-Lactamase Fim-1 From Pseudomonas Aeruginosa in the Mono-Zinc Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Metallo-Beta-Lactamase Fim-1 From Pseudomonas Aeruginosa in the Mono-Zinc Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:75.0 occ:1.00 ND1 A:HIS80 2.1 0.1 1.0 NE2 A:HIS78 2.2 79.2 1.0 NE2 A:HIS142 2.3 62.1 1.0 O A:HOH426 2.9 83.7 1.0 OD2 A:OCS161 2.9 91.4 1.0 CG A:HIS80 3.1 91.5 1.0 CE1 A:HIS80 3.1 97.7 1.0 CD2 A:HIS78 3.1 74.8 1.0 CD2 A:HIS142 3.2 56.6 1.0 CE1 A:HIS78 3.2 71.9 1.0 CE1 A:HIS142 3.3 62.7 1.0 CB A:HIS80 3.4 79.0 1.0 SG A:OCS161 4.0 82.5 1.0 OD1 A:ASP82 4.1 0.3 1.0 NE2 A:HIS80 4.2 98.1 1.0 CD2 A:HIS80 4.2 95.4 1.0 O A:HOH419 4.2 0.0 1.0 ND1 A:HIS78 4.3 72.9 1.0 CG A:HIS78 4.3 70.7 1.0 CB A:OCS161 4.3 71.5 1.0 CG A:HIS142 4.3 56.7 1.0 ND1 A:HIS142 4.3 60.5 1.0 OD1 A:OCS161 4.3 81.5 1.0 CG2 A:THR143 4.6 64.1 1.0 OD2 A:ASP82 4.6 0.2 1.0 CG A:ASP82 4.8 0.7 1.0 CA A:HIS80 4.9 74.3 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Metallo-Beta-Lactamase Fim-1 From Pseudomonas Aeruginosa in the Mono-Zinc Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Metallo-Beta-Lactamase Fim-1 From Pseudomonas Aeruginosa in the Mono-Zinc Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn300 b:79.7 occ:1.00 ND1 B:HIS80 2.1 0.1 1.0 NE2 B:HIS142 2.3 63.4 1.0 NE2 B:HIS78 2.3 72.6 1.0 O B:HOH403 2.5 95.7 1.0 OD2 B:OCS161 2.8 95.7 1.0 CG B:HIS80 3.0 89.0 1.0 CE1 B:HIS80 3.0 96.0 1.0 CD2 B:HIS78 3.1 73.2 1.0 CD2 B:HIS142 3.2 58.5 1.0 CE1 B:HIS142 3.3 64.5 1.0 CB B:HIS80 3.4 74.8 1.0 CE1 B:HIS78 3.4 71.1 1.0 SG B:OCS161 3.9 87.7 1.0 NE2 B:HIS80 4.1 95.9 1.0 CD2 B:HIS80 4.1 93.3 1.0 OD2 B:ASP82 4.1 0.6 1.0 CB B:OCS161 4.2 74.5 1.0 CG B:HIS78 4.3 68.1 1.0 OD1 B:OCS161 4.3 86.5 1.0 CG B:HIS142 4.3 60.1 1.0 ND1 B:HIS142 4.4 62.9 1.0 ND1 B:HIS78 4.4 71.2 1.0 CG2 B:THR143 4.6 61.3 1.0 OD1 B:ASP82 4.7 0.2 1.0 CA B:HIS80 4.9 70.9 1.0 CG B:ASP82 4.9 99.5 1.0

Y.Kim, C.Hatzos-Skintges, M.Endres, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Metallo-Beta-Lactamase Fim-1 From Pseudomonas Aeruginosa in the Mono-Zinc Form To Be Published.