Zinc in PDB 6uqk: Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide

The binding sites of Zinc atom in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide (pdb code 6uqk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide, PDB code: 6uqk:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn4000 b:0.8 occ:1.00 ND1 A:HIS2563 2.2 91.6 1.0 NE2 A:HIS2558 2.2 95.6 1.0 SG A:CYS2541 2.5 0.3 1.0 CE1 A:HIS2563 2.9 91.6 1.0 SG A:CYS2538 2.9 98.6 1.0 CD2 A:HIS2558 2.9 95.6 1.0 CE1 A:HIS2558 3.0 95.6 1.0 CG A:HIS2563 3.1 91.6 1.0 CB A:CYS2538 3.2 98.6 1.0 CB A:CYS2541 3.6 0.3 1.0 CB A:HIS2563 3.7 91.6 1.0 NE2 A:HIS2563 3.9 91.6 1.0 CG A:HIS2558 3.9 95.6 1.0 ND1 A:HIS2558 3.9 95.6 1.0 CD2 A:HIS2563 4.0 91.6 1.0 N A:CYS2541 4.5 0.3 1.0 CA A:CYS2538 4.7 98.6 1.0 CA A:CYS2541 4.7 0.3 1.0 CD1 A:LEU2543 4.8 0.0 1.0 CB A:ALA2607 4.8 0.6 1.0 O A:HIS2558 4.9 95.6 1.0

Zinc binding site 2 out of 4 in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn4000 b:0.1 occ:1.00 ND1 B:HIS2563 2.2 91.4 1.0 NE2 B:HIS2558 2.2 95.3 1.0 SG B:CYS2541 2.5 1.0 1.0 CE1 B:HIS2563 2.9 91.4 1.0 SG B:CYS2538 2.9 98.3 1.0 CD2 B:HIS2558 2.9 95.3 1.0 CE1 B:HIS2558 3.0 95.3 1.0 CG B:HIS2563 3.1 91.4 1.0 CB B:CYS2538 3.2 98.3 1.0 CB B:CYS2541 3.6 1.0 1.0 CB B:HIS2563 3.7 91.4 1.0 NE2 B:HIS2563 3.9 91.4 1.0 CG B:HIS2558 3.9 95.3 1.0 ND1 B:HIS2558 3.9 95.3 1.0 CD2 B:HIS2563 4.0 91.4 1.0 N B:CYS2541 4.5 1.0 1.0 CA B:CYS2538 4.7 98.3 1.0 CA B:CYS2541 4.7 1.0 1.0 CD1 B:LEU2543 4.8 0.4 1.0 CB B:ALA2607 4.8 0.9 1.0 O B:HIS2558 5.0 95.3 1.0

Zinc binding site 3 out of 4 in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn4000 b:0.2 occ:1.00 ND1 C:HIS2563 2.2 92.0 1.0 NE2 C:HIS2558 2.2 94.6 1.0 SG C:CYS2541 2.5 0.7 1.0 CE1 C:HIS2563 2.9 92.0 1.0 SG C:CYS2538 2.9 98.7 1.0 CD2 C:HIS2558 2.9 94.6 1.0 CE1 C:HIS2558 3.0 94.6 1.0 CG C:HIS2563 3.1 92.0 1.0 CB C:CYS2538 3.2 98.7 1.0 CB C:CYS2541 3.6 0.7 1.0 CB C:HIS2563 3.7 92.0 1.0 NE2 C:HIS2563 3.9 92.0 1.0 CG C:HIS2558 3.9 94.6 1.0 ND1 C:HIS2558 3.9 94.6 1.0 CD2 C:HIS2563 4.0 92.0 1.0 N C:CYS2541 4.5 0.7 1.0 CA C:CYS2538 4.7 98.7 1.0 CA C:CYS2541 4.7 0.7 1.0 CD1 C:LEU2543 4.8 0.1 1.0 CB C:ALA2607 4.8 0.4 1.0 O C:HIS2558 5.0 94.6 1.0

Zinc binding site 4 out of 4 in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn4000 b:0.5 occ:1.00 ND1 D:HIS2563 2.2 92.3 1.0 NE2 D:HIS2558 2.2 95.3 1.0 SG D:CYS2541 2.5 0.7 1.0 CE1 D:HIS2563 2.9 92.3 1.0 SG D:CYS2538 2.9 97.4 1.0 CD2 D:HIS2558 2.9 95.3 1.0 CE1 D:HIS2558 3.0 95.3 1.0 CG D:HIS2563 3.1 92.3 1.0 CB D:CYS2538 3.2 97.4 1.0 CB D:CYS2541 3.6 0.7 1.0 CB D:HIS2563 3.7 92.3 1.0 NE2 D:HIS2563 3.9 92.3 1.0 CG D:HIS2558 3.9 95.3 1.0 ND1 D:HIS2558 3.9 95.3 1.0 CD2 D:HIS2563 4.0 92.3 1.0 N D:CYS2541 4.5 0.7 1.0 CA D:CYS2538 4.7 97.4 1.0 CA D:CYS2541 4.7 0.7 1.0 CD1 D:LEU2543 4.8 0.8 1.0 CB D:ALA2607 4.8 0.0 1.0 O D:HIS2558 4.9 95.3 1.0

C.M.Azumaya, E.A.Linton, C.J.Risener, T.Nakagawa, E.Karakas. Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self-Binding Peptide To Be Published.