Zinc in PDB 6uqk: Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide (pdb code 6uqk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide, PDB code: 6uqk:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6uqk

Go back to Zinc Binding Sites List in 6uqk
Zinc binding site 1 out of 4 in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn4000

b:0.8
occ:1.00
ND1 A:HIS2563 2.2 91.6 1.0
NE2 A:HIS2558 2.2 95.6 1.0
SG A:CYS2541 2.5 0.3 1.0
CE1 A:HIS2563 2.9 91.6 1.0
SG A:CYS2538 2.9 98.6 1.0
CD2 A:HIS2558 2.9 95.6 1.0
CE1 A:HIS2558 3.0 95.6 1.0
CG A:HIS2563 3.1 91.6 1.0
CB A:CYS2538 3.2 98.6 1.0
CB A:CYS2541 3.6 0.3 1.0
CB A:HIS2563 3.7 91.6 1.0
NE2 A:HIS2563 3.9 91.6 1.0
CG A:HIS2558 3.9 95.6 1.0
ND1 A:HIS2558 3.9 95.6 1.0
CD2 A:HIS2563 4.0 91.6 1.0
N A:CYS2541 4.5 0.3 1.0
CA A:CYS2538 4.7 98.6 1.0
CA A:CYS2541 4.7 0.3 1.0
CD1 A:LEU2543 4.8 0.0 1.0
CB A:ALA2607 4.8 0.6 1.0
O A:HIS2558 4.9 95.6 1.0

Zinc binding site 2 out of 4 in 6uqk

Go back to Zinc Binding Sites List in 6uqk
Zinc binding site 2 out of 4 in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn4000

b:0.1
occ:1.00
ND1 B:HIS2563 2.2 91.4 1.0
NE2 B:HIS2558 2.2 95.3 1.0
SG B:CYS2541 2.5 1.0 1.0
CE1 B:HIS2563 2.9 91.4 1.0
SG B:CYS2538 2.9 98.3 1.0
CD2 B:HIS2558 2.9 95.3 1.0
CE1 B:HIS2558 3.0 95.3 1.0
CG B:HIS2563 3.1 91.4 1.0
CB B:CYS2538 3.2 98.3 1.0
CB B:CYS2541 3.6 1.0 1.0
CB B:HIS2563 3.7 91.4 1.0
NE2 B:HIS2563 3.9 91.4 1.0
CG B:HIS2558 3.9 95.3 1.0
ND1 B:HIS2558 3.9 95.3 1.0
CD2 B:HIS2563 4.0 91.4 1.0
N B:CYS2541 4.5 1.0 1.0
CA B:CYS2538 4.7 98.3 1.0
CA B:CYS2541 4.7 1.0 1.0
CD1 B:LEU2543 4.8 0.4 1.0
CB B:ALA2607 4.8 0.9 1.0
O B:HIS2558 5.0 95.3 1.0

Zinc binding site 3 out of 4 in 6uqk

Go back to Zinc Binding Sites List in 6uqk
Zinc binding site 3 out of 4 in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn4000

b:0.2
occ:1.00
ND1 C:HIS2563 2.2 92.0 1.0
NE2 C:HIS2558 2.2 94.6 1.0
SG C:CYS2541 2.5 0.7 1.0
CE1 C:HIS2563 2.9 92.0 1.0
SG C:CYS2538 2.9 98.7 1.0
CD2 C:HIS2558 2.9 94.6 1.0
CE1 C:HIS2558 3.0 94.6 1.0
CG C:HIS2563 3.1 92.0 1.0
CB C:CYS2538 3.2 98.7 1.0
CB C:CYS2541 3.6 0.7 1.0
CB C:HIS2563 3.7 92.0 1.0
NE2 C:HIS2563 3.9 92.0 1.0
CG C:HIS2558 3.9 94.6 1.0
ND1 C:HIS2558 3.9 94.6 1.0
CD2 C:HIS2563 4.0 92.0 1.0
N C:CYS2541 4.5 0.7 1.0
CA C:CYS2538 4.7 98.7 1.0
CA C:CYS2541 4.7 0.7 1.0
CD1 C:LEU2543 4.8 0.1 1.0
CB C:ALA2607 4.8 0.4 1.0
O C:HIS2558 5.0 94.6 1.0

Zinc binding site 4 out of 4 in 6uqk

Go back to Zinc Binding Sites List in 6uqk
Zinc binding site 4 out of 4 in the Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self- Binding Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn4000

b:0.5
occ:1.00
ND1 D:HIS2563 2.2 92.3 1.0
NE2 D:HIS2558 2.2 95.3 1.0
SG D:CYS2541 2.5 0.7 1.0
CE1 D:HIS2563 2.9 92.3 1.0
SG D:CYS2538 2.9 97.4 1.0
CD2 D:HIS2558 2.9 95.3 1.0
CE1 D:HIS2558 3.0 95.3 1.0
CG D:HIS2563 3.1 92.3 1.0
CB D:CYS2538 3.2 97.4 1.0
CB D:CYS2541 3.6 0.7 1.0
CB D:HIS2563 3.7 92.3 1.0
NE2 D:HIS2563 3.9 92.3 1.0
CG D:HIS2558 3.9 95.3 1.0
ND1 D:HIS2558 3.9 95.3 1.0
CD2 D:HIS2563 4.0 92.3 1.0
N D:CYS2541 4.5 0.7 1.0
CA D:CYS2538 4.7 97.4 1.0
CA D:CYS2541 4.7 0.7 1.0
CD1 D:LEU2543 4.8 0.8 1.0
CB D:ALA2607 4.8 0.0 1.0
O D:HIS2558 4.9 95.3 1.0

Reference:

C.M.Azumaya, E.A.Linton, C.J.Risener, T.Nakagawa, E.Karakas. Cryo-Em Structure of Type 3 IP3 Receptor Revealing Presence of A Self-Binding Peptide To Be Published.
Page generated: Wed Dec 16 13:00:06 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy