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Zinc in PDB 6ue3: Crystal Structure of Hcv NS3/4A D168A Protease in Complex with Pc (JZ01-15)

Protein crystallography data

The structure of Crystal Structure of Hcv NS3/4A D168A Protease in Complex with Pc (JZ01-15), PDB code: 6ue3 was solved by J.Zephyr, C.A.Schiffer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.29 / 1.56
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.616, 58.511, 59.938, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 18.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Hcv NS3/4A D168A Protease in Complex with Pc (JZ01-15) (pdb code 6ue3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Hcv NS3/4A D168A Protease in Complex with Pc (JZ01-15), PDB code: 6ue3:

Zinc binding site 1 out of 1 in 6ue3

Go back to Zinc Binding Sites List in 6ue3
Zinc binding site 1 out of 1 in the Crystal Structure of Hcv NS3/4A D168A Protease in Complex with Pc (JZ01-15)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Hcv NS3/4A D168A Protease in Complex with Pc (JZ01-15) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1202

b:12.9
occ:1.00
ND1 A:HIS1149 2.1 15.2 1.0
SG A:CYS1099 2.3 11.9 1.0
SG A:CYS1145 2.3 10.2 1.0
SG A:CYS1097 2.3 9.8 1.0
HB2 A:HIS1149 2.8 10.9 1.0
HB2 A:CYS1099 2.8 11.9 1.0
CE1 A:HIS1149 3.0 13.4 1.0
CG A:HIS1149 3.1 12.0 1.0
CB A:CYS1099 3.1 9.9 1.0
HE1 A:HIS1149 3.2 16.2 1.0
H A:CYS1099 3.2 13.9 1.0
HB3 A:CYS1145 3.2 11.8 1.0
HA A:CYS1097 3.3 9.6 1.0
CB A:CYS1145 3.3 9.8 1.0
CB A:CYS1097 3.4 9.0 1.0
CB A:HIS1149 3.4 9.0 1.0
HB2 A:CYS1097 3.4 10.8 1.0
HB2 A:CYS1145 3.4 11.8 1.0
H A:THR1098 3.7 12.9 1.0
HB3 A:ALA1147 3.7 14.7 1.0
HB3 A:CYS1099 3.8 11.9 1.0
CA A:CYS1097 3.8 8.0 1.0
N A:CYS1099 3.9 11.6 1.0
H A:HIS1149 3.9 11.3 1.0
HB3 A:HIS1149 4.0 10.9 1.0
CA A:CYS1099 4.1 10.2 1.0
NE2 A:HIS1149 4.2 15.9 1.0
CD2 A:HIS1149 4.2 16.3 1.0
N A:THR1098 4.2 10.7 1.0
HB3 A:CYS1097 4.3 10.8 1.0
H A:ALA1147 4.4 11.3 1.0
C A:CYS1097 4.5 9.9 1.0
CA A:HIS1149 4.6 8.0 1.0
HA A:CYS1099 4.6 12.2 1.0
N A:HIS1149 4.6 9.4 1.0
CB A:ALA1147 4.7 12.2 1.0
CA A:CYS1145 4.7 8.4 1.0
H A:CYS1145 4.7 11.2 1.0
HD2 A:PRO1146 4.8 10.7 1.0
O A:HOH1437 4.8 25.9 1.0
O A:HOH1330 4.9 22.8 1.0
HB2 A:ALA1147 4.9 14.7 1.0
O A:HOH1427 4.9 33.6 1.0
HE2 A:HIS1149 4.9 19.1 1.0
HB3 A:SER1101 5.0 19.6 1.0
C A:THR1098 5.0 13.8 1.0

Reference:

A.N.Matthew, J.Zephyr, C.A.Schiffer. Design of Hepatitis C NS3/4A Protease Inhibitors Leveraging Untapped Regions of the Substrate Envelope To Be Published.
Page generated: Wed Dec 16 12:58:32 2020

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