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Zinc in PDB 6uca: Crystal Structure of Human ZCCHC4 in Complex with Sah

Protein crystallography data

The structure of Crystal Structure of Human ZCCHC4 in Complex with Sah, PDB code: 6uca was solved by J.W.Lu, W.D.Ren, M.J.Huang, L.Gao, D.X.Li, G.G.Wang, J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.68 / 3.10
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 136.567, 290.380, 83.529, 90.00, 90.00, 90.00
R / Rfree (%) 24.9 / 28.1

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Zinc atom in the Crystal Structure of Human ZCCHC4 in Complex with Sah (pdb code 6uca). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 36 binding sites of Zinc where determined in the Crystal Structure of Human ZCCHC4 in Complex with Sah, PDB code: 6uca:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 36 in 6uca

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Zinc binding site 1 out of 36 in the Crystal Structure of Human ZCCHC4 in Complex with Sah


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human ZCCHC4 in Complex with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:0.6
occ:1.00
ND1 A:HIS42 1.4 0.5 1.0
CE1 A:HIS42 2.1 0.7 1.0
SG A:CYS73 2.3 89.7 1.0
CG A:HIS42 2.5 84.1 1.0
SG A:CYS64 2.6 67.8 1.0
SG A:CYS40 2.7 66.3 1.0
CB A:HIS42 3.2 55.1 1.0
NE2 A:HIS42 3.2 91.1 1.0
CB A:CYS73 3.3 92.8 1.0
CD2 A:HIS42 3.4 89.2 1.0
N A:HIS42 3.5 57.2 1.0
CD A:PRO41 3.9 74.4 1.0
CA A:HIS42 3.9 54.9 1.0
CB A:CYS64 4.0 79.8 1.0
CB A:CYS40 4.0 70.3 1.0
N A:PRO41 4.3 66.8 1.0
C A:PRO41 4.4 68.8 1.0
CG A:PRO41 4.4 70.2 1.0
CB A:PRO41 4.5 64.4 1.0
CA A:CYS73 4.6 87.1 1.0
CA A:PRO41 4.6 67.7 1.0
C A:CYS40 4.8 67.5 1.0
C A:HIS42 4.9 54.9 1.0

Zinc binding site 2 out of 36 in 6uca

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Zinc binding site 2 out of 36 in the Crystal Structure of Human ZCCHC4 in Complex with Sah


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human ZCCHC4 in Complex with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1003

b:68.8
occ:1.00
ND1 A:HIS143 2.2 54.7 1.0
ND1 A:HIS140 2.2 60.9 1.0
SG A:CYS125 2.3 61.4 1.0
SG A:CYS128 2.3 42.3 1.0
CE1 A:HIS143 2.9 64.3 1.0
CE1 A:HIS140 3.0 53.0 1.0
CG A:HIS143 3.1 60.3 1.0
CB A:CYS128 3.2 39.1 1.0
CG A:HIS140 3.3 49.8 1.0
OG1 A:THR127 3.5 47.6 1.0
CB A:HIS143 3.6 62.0 1.0
CB A:CYS125 3.6 59.4 1.0
CB A:HIS140 3.7 58.5 1.0
NE2 A:HIS143 3.9 65.5 1.0
CD2 A:HIS143 4.0 68.2 1.0
N A:CYS128 4.1 67.0 1.0
NE2 A:HIS140 4.1 53.8 1.0
CA A:CYS128 4.2 58.4 1.0
CA A:HIS140 4.3 67.7 1.0
CD2 A:HIS140 4.3 53.8 1.0
C A:THR127 4.8 43.1 1.0
CB A:THR127 4.8 47.8 1.0
CA A:CYS125 4.9 49.9 1.0

Zinc binding site 3 out of 36 in 6uca

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Zinc binding site 3 out of 36 in the Crystal Structure of Human ZCCHC4 in Complex with Sah


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Human ZCCHC4 in Complex with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1004

b:0.0
occ:1.00
ND1 A:HIS393 2.2 0.8 1.0
SG A:CYS380 2.3 91.0 1.0
SG A:CYS383 2.3 0.9 1.0
SG A:CYS400 2.3 89.9 1.0
CG A:HIS393 3.0 96.6 1.0
CE1 A:HIS393 3.1 94.0 1.0
N A:CYS400 3.1 96.3 1.0
CB A:HIS393 3.3 96.9 1.0
CB A:CYS400 3.4 92.9 1.0
CB A:CYS380 3.5 87.7 1.0
CA A:CYS400 3.6 89.9 1.0
C A:SER399 3.9 85.1 1.0
CA A:HIS393 4.0 95.8 1.0
CD2 A:HIS393 4.0 99.8 1.0
CB A:CYS383 4.0 0.1 1.0
NE2 A:HIS393 4.1 98.2 1.0
N A:CYS383 4.3 89.0 1.0
CA A:SER399 4.3 84.2 1.0
CB A:PRO382 4.6 97.9 1.0
O A:SER399 4.6 87.2 1.0
CG1 A:VAL387 4.7 90.3 1.0
CA A:CYS383 4.8 84.9 1.0
CA A:CYS380 4.9 89.9 1.0
N A:SER399 4.9 87.6 1.0
CG A:PRO382 5.0 0.9 1.0

Zinc binding site 4 out of 36 in 6uca

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Zinc binding site 4 out of 36 in the Crystal Structure of Human ZCCHC4 in Complex with Sah


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Human ZCCHC4 in Complex with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1005

b:0.4
occ:1.00
ND1 A:HIS410 2.1 0.6 1.0
SG A:CYS417 2.2 0.8 1.0
SG A:CYS394 2.3 98.9 1.0
SG A:CYS397 2.3 0.3 1.0
CE1 A:HIS410 3.0 0.7 1.0
CG A:HIS410 3.1 1.0 1.0
CB A:CYS417 3.4 92.5 1.0
CB A:CYS394 3.5 0.4 1.0
CB A:HIS410 3.6 0.8 1.0
N A:CYS417 3.7 93.1 1.0
C A:LYS416 3.7 0.9 1.0
CB A:CYS397 3.8 0.0 1.0
O A:LYS416 3.8 0.8 1.0
CA A:CYS417 3.9 94.1 1.0
N A:CYS397 4.0 99.2 1.0
NE2 A:HIS410 4.1 0.9 1.0
CD2 A:HIS410 4.2 0.0 1.0
CA A:HIS410 4.2 0.5 1.0
CA A:LYS416 4.4 97.5 1.0
CA A:CYS397 4.5 0.3 1.0
C A:LEU396 4.6 0.3 1.0
CG2 A:THR401 4.8 89.9 1.0
OG1 A:THR401 4.8 0.4 1.0
CB A:LEU396 4.8 0.5 1.0
CA A:CYS394 4.9 98.1 1.0
CB A:THR401 4.9 90.4 1.0
N A:LEU396 5.0 1.0 1.0

Zinc binding site 5 out of 36 in 6uca

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Zinc binding site 5 out of 36 in the Crystal Structure of Human ZCCHC4 in Complex with Sah


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Human ZCCHC4 in Complex with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1006

b:0.2
occ:1.00
ND1 A:HIS424 2.1 0.7 1.0
SG A:CYS411 2.3 0.7 1.0
SG A:CYS431 2.3 0.2 1.0
SG A:CYS414 2.3 0.8 1.0
CE1 A:HIS424 2.5 0.0 1.0
CG A:HIS424 3.1 0.2 1.0
CB A:CYS414 3.4 0.6 1.0
CB A:CYS411 3.4 0.7 1.0
CB A:CYS431 3.6 0.2 1.0
NE2 A:HIS424 3.6 0.1 1.0
N A:CYS431 3.7 0.1 1.0
CB A:HIS424 3.9 0.7 1.0
CD2 A:HIS424 3.9 0.4 1.0
N A:CYS414 3.9 0.8 1.0
CA A:CYS431 4.0 0.3 1.0
C A:HIS430 4.2 0.5 1.0
CA A:CYS414 4.3 0.1 1.0
CA A:HIS424 4.3 0.8 1.0
CA A:HIS430 4.4 0.5 1.0
O A:ASN429 4.7 0.9 1.0
CA A:CYS411 4.8 0.6 1.0
C A:LEU413 4.9 0.8 1.0
CB A:LEU413 4.9 0.8 1.0
O A:HIS430 4.9 0.1 1.0

Zinc binding site 6 out of 36 in 6uca

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Zinc binding site 6 out of 36 in the Crystal Structure of Human ZCCHC4 in Complex with Sah


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Human ZCCHC4 in Complex with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1007

b:0.3
occ:1.00
NE2 A:HIS436 2.2 0.3 1.0
SG A:CYS428 2.3 0.7 1.0
SG A:CYS425 2.4 0.1 1.0
SG A:CYS438 2.4 0.5 1.0
CE1 A:HIS436 2.8 0.1 1.0
CD2 A:HIS436 3.3 0.5 1.0
CB A:CYS425 3.4 0.9 1.0
CB A:CYS428 3.4 0.7 1.0
CB A:CYS438 3.5 0.2 1.0
CA A:CYS438 3.7 1.0 1.0
ND1 A:HIS436 4.0 0.5 1.0
CG A:HIS436 4.2 0.4 1.0
N A:CYS438 4.4 0.0 1.0
O A:SER426 4.6 0.2 1.0
CA A:CYS428 4.7 0.4 1.0
O A:SER437 4.7 0.3 1.0
N A:CYS428 4.8 0.4 1.0
C A:SER437 4.8 1.0 1.0
CA A:CYS425 4.8 0.8 1.0
C A:CYS438 4.9 0.8 1.0
N A:GLU439 4.9 0.3 1.0

Zinc binding site 7 out of 36 in 6uca

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Zinc binding site 7 out of 36 in the Crystal Structure of Human ZCCHC4 in Complex with Sah


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Human ZCCHC4 in Complex with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1002

b:0.3
occ:1.00
NE2 B:HIS42 2.3 0.2 1.0
SG B:CYS64 2.4 0.8 1.0
SG B:CYS73 2.4 0.7 1.0
SG B:CYS40 2.4 0.2 1.0
CD2 B:HIS42 2.9 0.8 1.0
CE1 B:HIS42 2.9 0.1 1.0
CB B:CYS73 3.1 0.4 1.0
CB B:CYS64 3.3 0.8 1.0
CB B:CYS40 3.6 0.8 1.0
CG B:HIS42 3.6 0.3 1.0
ND1 B:HIS42 3.6 0.9 1.0
CA B:CYS64 4.0 0.7 1.0
N B:SER65 4.1 0.0 1.0
N B:HIS42 4.3 0.9 1.0
CD B:PRO41 4.5 0.2 1.0
N B:PRO41 4.5 0.1 1.0
O B:HIS42 4.6 0.2 1.0
CA B:CYS73 4.6 1.0 1.0
C B:CYS64 4.6 0.4 1.0
C B:CYS40 4.8 0.5 1.0
CA B:CYS40 4.8 0.5 1.0
CB B:HIS42 4.8 0.8 1.0
N B:ALA66 4.8 0.0 1.0
CA B:HIS42 4.9 0.5 1.0
CB B:PRO41 5.0 0.8 1.0

Zinc binding site 8 out of 36 in 6uca

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Zinc binding site 8 out of 36 in the Crystal Structure of Human ZCCHC4 in Complex with Sah


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Human ZCCHC4 in Complex with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1003

b:0.3
occ:1.00
ND1 B:HIS143 2.0 0.7 1.0
SG B:CYS125 2.2 0.3 1.0
ND1 B:HIS140 2.2 0.2 1.0
SG B:CYS128 2.3 0.1 1.0
CE1 B:HIS143 2.8 0.9 1.0
CB B:CYS128 3.1 0.5 1.0
CE1 B:HIS140 3.2 0.5 1.0
CG B:HIS143 3.2 0.4 1.0
CG B:HIS140 3.2 0.3 1.0
CB B:CYS125 3.4 0.7 1.0
CB B:HIS140 3.5 0.2 1.0
CB B:HIS143 3.7 0.3 1.0
OG1 B:THR127 3.8 1.0 1.0
N B:CYS128 3.9 0.7 1.0
NE2 B:HIS143 4.0 0.0 1.0
CA B:CYS128 4.1 0.8 1.0
CA B:HIS140 4.2 0.3 1.0
CD2 B:HIS143 4.2 0.3 1.0
NE2 B:HIS140 4.3 1.0 1.0
CD2 B:HIS140 4.4 1.0 1.0
CA B:CYS125 4.8 0.2 1.0
CB B:THR127 4.9 1.0 1.0
C B:THR127 4.9 0.5 1.0
O B:GLN139 4.9 0.3 1.0

Zinc binding site 9 out of 36 in 6uca

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Zinc binding site 9 out of 36 in the Crystal Structure of Human ZCCHC4 in Complex with Sah


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of Human ZCCHC4 in Complex with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1004

b:0.7
occ:1.00
ND1 B:HIS393 2.1 1.0 1.0
SG B:CYS383 2.3 82.5 1.0
SG B:CYS400 2.3 84.0 1.0
SG B:CYS380 2.3 81.7 1.0
CG B:HIS393 2.9 84.3 1.0
CE1 B:HIS393 3.1 97.3 1.0
CB B:HIS393 3.2 69.2 1.0
CB B:CYS380 3.4 86.0 1.0
CB B:CYS400 3.6 83.9 1.0
N B:CYS400 3.7 72.4 1.0
CG B:PRO382 3.9 97.0 1.0
CB B:CYS383 4.0 0.9 1.0
CD2 B:HIS393 4.0 92.7 1.0
NE2 B:HIS393 4.1 78.8 1.0
CA B:CYS400 4.2 80.9 1.0
CA B:HIS393 4.2 67.5 1.0
N B:CYS383 4.3 88.9 1.0
C B:SER399 4.6 72.4 1.0
CG1 B:VAL387 4.7 81.6 1.0
CD B:PRO382 4.7 89.2 1.0
CA B:CYS383 4.8 97.6 1.0
CA B:CYS380 4.8 89.1 1.0
CB B:PRO382 4.9 99.9 1.0
CA B:SER399 4.9 75.0 1.0
N B:HIS393 5.0 66.0 1.0

Zinc binding site 10 out of 36 in 6uca

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Zinc binding site 10 out of 36 in the Crystal Structure of Human ZCCHC4 in Complex with Sah


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of Human ZCCHC4 in Complex with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1005

b:100.0
occ:1.00
ND1 B:HIS410 2.2 0.5 1.0
SG B:CYS397 2.3 97.9 1.0
SG B:CYS394 2.3 70.4 1.0
SG B:CYS417 2.5 74.3 1.0
CG B:HIS410 3.0 78.2 1.0
CE1 B:HIS410 3.1 86.9 1.0
CB B:HIS410 3.3 70.7 1.0
CB B:CYS394 3.4 77.3 1.0
CB B:CYS417 3.6 75.1 1.0
N B:CYS417 3.7 86.2 1.0
CB B:CYS397 3.8 96.0 1.0
CA B:CYS417 3.9 83.2 1.0
N B:CYS397 4.0 77.1 1.0
CA B:HIS410 4.1 70.8 1.0
CD2 B:HIS410 4.1 76.3 1.0
NE2 B:HIS410 4.1 77.3 1.0
C B:LYS416 4.2 87.4 1.0
CB B:LEU396 4.5 88.3 1.0
CA B:CYS397 4.6 80.1 1.0
O B:LYS416 4.7 90.2 1.0
CA B:CYS394 4.8 75.4 1.0
CA B:LYS416 4.8 84.6 1.0
N B:HIS410 4.9 68.7 1.0
CG2 B:THR401 5.0 70.9 1.0

Reference:

J.W.Lu, W.D.Ren, M.J.Huang, L.Gao, D.X.Li, G.G.Wang, J.Song. Crystal Structure of Human ZCCHC4 in Complex with Sah To Be Published.
Page generated: Wed Dec 16 12:58:29 2020

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