Zinc in PDB 6thh: Crystal Structure of Type I-D Crispr-Cas Nuclease CAS10D in Complex with the SIRV3 ACRID1 (GP02) Anti-Crispr Protein

Protein crystallography data

The structure of Crystal Structure of Type I-D Crispr-Cas Nuclease CAS10D in Complex with the SIRV3 ACRID1 (GP02) Anti-Crispr Protein, PDB code: 6thh was solved by M.C.Manav, D.E.Brodersen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.54 / 3.48
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 157.990, 157.990, 130.240, 90.00, 90.00, 90.00
R / Rfree (%) 23.6 / 25.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Type I-D Crispr-Cas Nuclease CAS10D in Complex with the SIRV3 ACRID1 (GP02) Anti-Crispr Protein (pdb code 6thh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Type I-D Crispr-Cas Nuclease CAS10D in Complex with the SIRV3 ACRID1 (GP02) Anti-Crispr Protein, PDB code: 6thh:

Zinc binding site 1 out of 1 in 6thh

Go back to Zinc Binding Sites List in 6thh
Zinc binding site 1 out of 1 in the Crystal Structure of Type I-D Crispr-Cas Nuclease CAS10D in Complex with the SIRV3 ACRID1 (GP02) Anti-Crispr Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Type I-D Crispr-Cas Nuclease CAS10D in Complex with the SIRV3 ACRID1 (GP02) Anti-Crispr Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn902

b:0.0
occ:1.00
SG C:CYS481 2.3 0.2 1.0
SG C:CYS432 2.3 0.7 1.0
SG C:CYS478 2.4 97.7 1.0
SG C:CYS429 2.5 0.1 1.0
CB C:CYS432 3.2 0.6 1.0
CB C:CYS429 3.5 0.6 1.0
CB C:CYS481 3.7 0.1 1.0
CB C:CYS478 3.8 0.3 1.0
NH2 C:ARG197 4.0 0.6 1.0
N C:CYS432 4.1 0.5 1.0
N C:CYS478 4.1 0.2 1.0
N C:CYS481 4.2 0.1 1.0
CA C:CYS432 4.2 0.7 1.0
CG1 C:VAL431 4.3 0.4 1.0
CA C:CYS478 4.5 0.5 1.0
CA C:CYS481 4.6 0.6 1.0
O C:CYS478 4.6 0.9 1.0
N C:GLY433 4.8 0.6 1.0
CB C:ILE480 4.8 0.5 1.0
C C:CYS432 4.8 0.7 1.0
C C:CYS478 4.9 0.7 1.0
CA C:CYS429 4.9 0.3 1.0

Reference:

M.C.Manav, L.B.Van, J.Lin, A.Fuglsang, X.Peng, D.E.Brodersen. Structural Basis For Inhibition of An Archaeal Crispr-Cas Type I-D Large Subunit By An Anti-Crispr Protein. Nat Commun V. 11 5993 2020.
ISSN: ESSN 2041-1723
PubMed: 33239638
DOI: 10.1038/S41467-020-19847-X
Page generated: Wed Dec 16 12:53:24 2020

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