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Zinc in PDB 6swm: Selenol Bound Carbonic Anhydrase I

Enzymatic activity of Selenol Bound Carbonic Anhydrase I

All present enzymatic activity of Selenol Bound Carbonic Anhydrase I:
4.2.1.1;

Protein crystallography data

The structure of Selenol Bound Carbonic Anhydrase I, PDB code: 6swm was solved by A.Angeli, M.Ferraroni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.66 / 2.77
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.789, 69.586, 119.191, 90.00, 90.00, 90.00
R / Rfree (%) 27.2 / 33

Zinc Binding Sites:

The binding sites of Zinc atom in the Selenol Bound Carbonic Anhydrase I (pdb code 6swm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Selenol Bound Carbonic Anhydrase I, PDB code: 6swm:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6swm

Go back to Zinc Binding Sites List in 6swm
Zinc binding site 1 out of 2 in the Selenol Bound Carbonic Anhydrase I


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Selenol Bound Carbonic Anhydrase I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:36.7
occ:1.00
NE2 A:HIS96 1.9 25.6 1.0
NE2 A:HIS94 2.0 38.0 1.0
ND1 A:HIS119 2.2 37.4 1.0
SE A:LVW302 2.6 22.8 1.0
CE1 A:HIS96 2.8 24.7 1.0
CE1 A:HIS94 2.9 37.6 1.0
CE1 A:HIS119 3.0 38.9 1.0
CD2 A:HIS96 3.0 25.4 1.0
C1 A:LVW302 3.0 13.2 1.0
CD2 A:HIS94 3.0 37.0 1.0
CG A:HIS119 3.3 35.8 1.0
OG1 A:THR199 3.6 36.8 1.0
CB A:HIS119 3.7 34.6 1.0
ND1 A:HIS96 3.9 26.2 1.0
ND1 A:HIS94 4.0 36.1 1.0
CG A:HIS96 4.1 26.6 1.0
CG A:HIS94 4.1 35.0 1.0
NE2 A:HIS119 4.2 38.6 1.0
CD2 A:HIS119 4.3 36.4 1.0
OE2 A:GLU106 4.3 38.2 1.0
C A:LVW302 4.3 11.1 1.0
O A:LVW302 4.4 10.3 1.0
ND1 A:HIS200 4.9 43.8 1.0
CE1 A:HIS200 5.0 43.4 1.0

Zinc binding site 2 out of 2 in 6swm

Go back to Zinc Binding Sites List in 6swm
Zinc binding site 2 out of 2 in the Selenol Bound Carbonic Anhydrase I


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Selenol Bound Carbonic Anhydrase I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:28.7
occ:1.00
NE2 B:HIS94 1.9 26.5 1.0
ND1 B:HIS119 2.0 36.6 1.0
NE2 B:HIS96 2.1 31.0 1.0
SE B:LVW302 2.3 34.9 1.0
CE1 B:HIS94 2.8 28.1 1.0
CE1 B:HIS119 2.9 39.1 1.0
CD2 B:HIS94 2.9 27.7 1.0
CD2 B:HIS96 3.0 31.1 1.0
CG B:HIS119 3.1 34.4 1.0
CE1 B:HIS96 3.1 32.3 1.0
C1 B:LVW302 3.2 17.9 1.0
CB B:HIS119 3.5 30.5 1.0
OG1 B:THR199 3.7 50.5 1.0
ND1 B:HIS94 4.0 29.4 1.0
CG B:HIS94 4.0 28.4 1.0
NE2 B:HIS119 4.1 40.8 1.0
CG B:HIS96 4.1 32.3 1.0
OE2 B:GLU106 4.2 31.4 1.0
CD2 B:HIS119 4.2 38.1 1.0
ND1 B:HIS96 4.2 32.6 1.0
C B:LVW302 4.5 14.3 1.0
CH2 B:TRP209 4.9 32.0 1.0

Reference:

A.Angeli, M.Ferraroni. Selenol Bound Carbonic Anhydrase I To Be Published.
Page generated: Tue Oct 29 07:43:31 2024

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