Zinc in PDB 6sel: Multicrystal Structure of Thermolysin at Room Temperature Using A Multilayer Monochromator.

Enzymatic activity of Multicrystal Structure of Thermolysin at Room Temperature Using A Multilayer Monochromator.

All present enzymatic activity of Multicrystal Structure of Thermolysin at Room Temperature Using A Multilayer Monochromator.:
3.4.24.27;

Protein crystallography data

The structure of Multicrystal Structure of Thermolysin at Room Temperature Using A Multilayer Monochromator., PDB code: 6sel was solved by J.Sandy, J.Sanchez-Weatherby, H.Mikolajek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 81.02 / 2.20
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.558, 93.558, 130.591, 90.00, 90.00, 120.00
R / Rfree (%) 12.9 / 16.9

Other elements in 6sel:

The structure of Multicrystal Structure of Thermolysin at Room Temperature Using A Multilayer Monochromator. also contains other interesting chemical elements:

Calcium (Ca) 5 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Multicrystal Structure of Thermolysin at Room Temperature Using A Multilayer Monochromator. (pdb code 6sel). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Multicrystal Structure of Thermolysin at Room Temperature Using A Multilayer Monochromator., PDB code: 6sel:

Zinc binding site 1 out of 1 in 6sel

Go back to Zinc Binding Sites List in 6sel
Zinc binding site 1 out of 1 in the Multicrystal Structure of Thermolysin at Room Temperature Using A Multilayer Monochromator.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Multicrystal Structure of Thermolysin at Room Temperature Using A Multilayer Monochromator. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:18.8
occ:1.00
 OE2 A:GLU166 2.0 18.6 1.0
NE2 A:HIS142 2.0 16.5 1.0
NE2 A:HIS146 2.1 17.3 1.0
CD A:GLU166 2.7 22.0 1.0
O A:HOH604 2.7 31.0 1.0
OE1 A:GLU166 2.8 19.8 1.0
CE1 A:HIS146 2.9 20.5 1.0
CD2 A:HIS142 3.0 19.2 1.0
CE1 A:HIS142 3.0 16.8 1.0
HE1 A:HIS146 3.0 24.6 1.0
CD2 A:HIS146 3.1 19.2 1.0
HH A:TYR157 3.2 36.4 1.0
HD2 A:HIS142 3.2 23.1 1.0
HE1 A:HIS142 3.2 20.2 1.0
HD2 A:HIS146 3.4 23.0 1.0
OH A:TYR157 3.9 30.3 1.0
HA A:ILE402 4.1 32.7 0.0
HB2 A:SER169 4.1 20.3 1.0
NE2 A:HIS231 4.1 23.5 1.0
ND1 A:HIS146 4.1 18.0 1.0
ND1 A:HIS142 4.1 16.3 1.0
CG A:HIS142 4.2 16.8 1.0
CG A:GLU166 4.2 17.7 1.0
CG A:HIS146 4.2 18.8 1.0
HB3 A:SER169 4.3 20.3 1.0
HD2 A:HIS231 4.3 29.1 1.0
HE1 A:TYR157 4.3 38.8 1.0
O A:HOH515 4.3 31.6 1.0
O A:HOH695 4.5 39.0 1.0
CB A:SER169 4.5 16.9 1.0
CD2 A:HIS231 4.6 24.2 1.0
OE1 A:GLU143 4.6 20.3 1.0
O A:HOH662 4.7 26.4 1.0
O A:ILE402 4.7 24.8 1.0
CA A:ILE402 4.8 27.2 1.0
OG A:SER169 4.8 17.8 1.0
HH22 A:ARG203 4.8 22.1 1.0
CA A:GLU166 4.8 18.8 1.0
HD1 A:HIS146 4.9 21.6 1.0
CZ A:TYR157 4.9 32.6 1.0
C A:ILE402 4.9 29.2 1.0
N A:ILE402 4.9 25.3 1.0
HD1 A:HIS142 4.9 19.6 1.0
CE1 A:TYR157 5.0 32.3 1.0

Reference:

J.Sandy, J.Sanchez-Weatherby, H.Mikolajek. Multicrystal Structure of Thermolysin at Room Temperature Using A Multilayer Monochromator. To Be Published.
Page generated: Wed Dec 16 12:47:40 2020

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